{"id":"https://openalex.org/W2000265519","doi":"https://doi.org/10.1186/1752-0509-7-s2-s8","title":"ppiPre: predicting protein-protein interactions by combining heterogeneous features","display_name":"ppiPre: predicting protein-protein interactions by combining heterogeneous features","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2000265519","doi":"https://doi.org/10.1186/1752-0509-7-s2-s8","mag":"2000265519","pmid":"https://pubmed.ncbi.nlm.nih.gov/24565177"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-s2-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s2-s8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-S2-S8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-S2-S8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101971932","display_name":"Yue Deng","orcid":"https://orcid.org/0000-0002-8263-1871"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yue Deng","raw_affiliation_strings":["Institute of Software Engineering, Xidian University, Xi'an, 710071, PR China","School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","School of Computer Science and Technology, Xidian University, Xi\u2019an, PR China"],"affiliations":[{"raw_affiliation_string":"Institute of Software Engineering, Xidian University, Xi'an, 710071, PR China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi\u2019an, PR China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060109811","display_name":"Lin Gao","orcid":"https://orcid.org/0000-0001-6396-0787"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Gao","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","School of Computer Science & Technology, Xidian University, Xi'an, PR China#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science & Technology, Xidian University, Xi'an, PR China#TAB#","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054607668","display_name":"Bingbo Wang","orcid":"https://orcid.org/0000-0002-1808-1852"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingbo Wang","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","School of Computer Science & Technology, Xidian University, Xi'an, PR China#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science & Technology, Xidian University, Xi'an, PR China#TAB#","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101971932"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":null,"apc_paid":null,"fwci":2.3852,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.88549825,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"S2","first_page":"S8","last_page":"S8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.963699996471405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7604575157165527},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5892249941825867},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.48241838812828064},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46279358863830566},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.45130595564842224},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4432370364665985},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42657023668289185},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41087356209754944},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3610122799873352},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.31733596324920654},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31292498111724854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1707078218460083},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.15674996376037598},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10039260983467102}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7604575157165527},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5892249941825867},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.48241838812828064},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46279358863830566},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.45130595564842224},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4432370364665985},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42657023668289185},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41087356209754944},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3610122799873352},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.31733596324920654},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31292498111724854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1707078218460083},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.15674996376037598},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10039260983467102},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-7-s2-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s2-s8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-S2-S8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24565177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24565177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2852270","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3851814","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-s2-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s2-s8","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-S2-S8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323230","display_name":"Xidian University","ror":"https://ror.org/05s92vm98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000265519.pdf","grobid_xml":"https://content.openalex.org/works/W2000265519.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1918391659","https://openalex.org/W1964052513","https://openalex.org/W1976937534","https://openalex.org/W1979104937","https://openalex.org/W1980472375","https://openalex.org/W1994108141","https://openalex.org/W1994321911","https://openalex.org/W2007444087","https://openalex.org/W2042301222","https://openalex.org/W2050583899","https://openalex.org/W2065304353","https://openalex.org/W2071529189","https://openalex.org/W2079665010","https://openalex.org/W2084619201","https://openalex.org/W2099862356","https://openalex.org/W2100935296","https://openalex.org/W2103017472","https://openalex.org/W2108238425","https://openalex.org/W2109248504","https://openalex.org/W2110857277","https://openalex.org/W2117805756","https://openalex.org/W2119359534","https://openalex.org/W2128049108","https://openalex.org/W2133138357","https://openalex.org/W2135526239","https://openalex.org/W2137492047","https://openalex.org/W2138802577","https://openalex.org/W2145427519","https://openalex.org/W2149310258","https://openalex.org/W2154454189","https://openalex.org/W2155006702","https://openalex.org/W2155653061","https://openalex.org/W2156909104","https://openalex.org/W2159482845","https://openalex.org/W2161358836","https://openalex.org/W2161701113","https://openalex.org/W2164105194","https://openalex.org/W2164813401","https://openalex.org/W2169250301","https://openalex.org/W2745750801","https://openalex.org/W4230674625","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W3120676751"],"abstract_inverted_index":{"We":[0],"applied":[1],"our":[2],"framework":[3],"to":[4,89],"both":[5],"binary":[6],"and":[7,34,85],"co-complex":[8,74],"gold-standard":[9],"PPI":[10,63,75,83],"data":[11,32,84],"sets.":[12],"The":[13,48],"detailed":[14],"analysis":[15,49],"on":[16,28,58],"three":[17,39],"GO":[18,23,42],"aspects":[19,24,40],"suggests":[20],"that":[21,35,52],"different":[22,29],"should":[25],"be":[26,87],"used":[27,88],"kinds":[30],"of":[31,41,61],"sets,":[33],"combining":[36],"all":[37],"the":[38,45,59,62,73],"often":[43],"gets":[44],"best":[46],"result.":[47],"also":[50],"shows":[51],"using":[53],"only":[54],"features":[55],"based":[56],"solely":[57],"topology":[60],"network":[64],"can":[65,86],"get":[66],"a":[67],"very":[68],"good":[69],"result":[70],"when":[71],"predicting":[72],"data.":[76],"ppiPre":[77],"provides":[78],"useful":[79],"functions":[80],"for":[81,92],"analysing":[82],"predict":[90],"PPIs":[91],"multiple":[93],"species.":[94]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3}],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}
