{"id":"https://openalex.org/W2118143168","doi":"https://doi.org/10.1186/1752-0509-7-s1-s1","title":"Characterization of aberrant pathways across human cancers","display_name":"Characterization of aberrant pathways across human cancers","publication_year":2013,"publication_date":"2013-08-01","ids":{"openalex":"https://openalex.org/W2118143168","doi":"https://doi.org/10.1186/1752-0509-7-s1-s1","mag":"2118143168","pmid":"https://pubmed.ncbi.nlm.nih.gov/24267866"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-s1-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s1-s1","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-7-S1-S1","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-7-S1-S1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043465280","display_name":"Antti Ylip\u00e4\u00e4","orcid":"https://orcid.org/0000-0001-6772-1855"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Antti Ylip\u00e4\u00e4","raw_affiliation_strings":["Department of Signal Processing, Tampere University of Technology, Korkeakoulunkatu 1, 33101, Tampere, Finland","[Department of Signal Processing, Tampere University of Technology, Tampere, FINLAND]"],"affiliations":[{"raw_affiliation_string":"Department of Signal Processing, Tampere University of Technology, Korkeakoulunkatu 1, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"[Department of Signal Processing, Tampere University of Technology, Tampere, FINLAND]","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026230936","display_name":"Olli Yli\u2010Harja","orcid":"https://orcid.org/0000-0001-8581-4414"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli Yli-Harja","raw_affiliation_strings":["Department of Signal Processing, Tampere University of Technology, Korkeakoulunkatu 1, 33101, Tampere, Finland","[Department of Signal Processing, Tampere University of Technology, Tampere, FINLAND]"],"affiliations":[{"raw_affiliation_string":"Department of Signal Processing, Tampere University of Technology, Korkeakoulunkatu 1, 33101, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"[Department of Signal Processing, Tampere University of Technology, Tampere, FINLAND]","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100441688","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0002-6968-6974"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX, 77030, USA","The University of Texas MD Anderson Cancer Center, Houston, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I1343551460"]},{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center, Houston, USA#TAB#","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063194021","display_name":"Matti Nykter","orcid":"https://orcid.org/0000-0001-6956-2843"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Matti Nykter","raw_affiliation_strings":["Institute for Biomedical Technology, University of Tampere, Biokatu 8, 33520, Tampere, Finland","Institute for Biomedical Technology, University of Tampere, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technology, University of Tampere, Biokatu 8, 33520, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Institute for Biomedical Technology, University of Tampere, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043465280"],"corresponding_institution_ids":["https://openalex.org/I4210133110"],"apc_list":null,"apc_paid":null,"fwci":0.8984,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.7473352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"S1","first_page":"S1","last_page":"S1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6481038331985474},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6294627785682678},{"id":"https://openalex.org/keywords/malignancy","display_name":"Malignancy","score":0.6145085096359253},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6123220920562744},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4677963852882385},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4574652314186096},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.44217774271965027},{"id":"https://openalex.org/keywords/tumour-heterogeneity","display_name":"Tumour heterogeneity","score":0.43627676367759705},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4264426529407501},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.420762300491333},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36659660935401917},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30507588386535645},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3017647862434387},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.27729272842407227},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23512005805969238},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.18935969471931458}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6481038331985474},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6294627785682678},{"id":"https://openalex.org/C2779399171","wikidata":"https://www.wikidata.org/wiki/Q1483951","display_name":"Malignancy","level":2,"score":0.6145085096359253},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6123220920562744},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4677963852882385},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4574652314186096},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.44217774271965027},{"id":"https://openalex.org/C2777306565","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumour heterogeneity","level":3,"score":0.43627676367759705},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4264426529407501},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.420762300491333},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36659660935401917},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30507588386535645},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3017647862434387},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.27729272842407227},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23512005805969238},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.18935969471931458},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1752-0509-7-s1-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s1-s1","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-7-S1-S1","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24267866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24267866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:tampub.uta.fi:10024/68243","is_oa":false,"landing_page_url":"http://tampub.uta.fi/handle/10024/68243","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"publishedVersion"},{"id":"pmh:oai:europepmc.org:2744225","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3750561","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3750561","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3750561","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/68243","is_oa":false,"landing_page_url":"https://trepo.tuni.fi/handle/10024/68243","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-s1-s1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-s1-s1","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-7-S1-S1","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8299999833106995,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118143168.pdf","grobid_xml":"https://content.openalex.org/works/W2118143168.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W571448349","https://openalex.org/W1650797637","https://openalex.org/W1849061857","https://openalex.org/W1893588436","https://openalex.org/W1912988777","https://openalex.org/W2004792595","https://openalex.org/W2008702165","https://openalex.org/W2011912935","https://openalex.org/W2022401242","https://openalex.org/W2025183726","https://openalex.org/W2038596108","https://openalex.org/W2044702943","https://openalex.org/W2068566873","https://openalex.org/W2086797990","https://openalex.org/W2096283457","https://openalex.org/W2100714130","https://openalex.org/W2105528101","https://openalex.org/W2108208897","https://openalex.org/W2117692326","https://openalex.org/W2123696077","https://openalex.org/W2130410032","https://openalex.org/W2145489645","https://openalex.org/W2153056550","https://openalex.org/W2156307055","https://openalex.org/W2160382843","https://openalex.org/W2161289668","https://openalex.org/W2262414037","https://openalex.org/W2275877493","https://openalex.org/W2560367415","https://openalex.org/W4241370600"],"related_works":["https://openalex.org/W2092561569","https://openalex.org/W2377100155","https://openalex.org/W2793887421","https://openalex.org/W3153228984","https://openalex.org/W4389671191","https://openalex.org/W4247453431","https://openalex.org/W4312779314","https://openalex.org/W1965152511","https://openalex.org/W1980329767","https://openalex.org/W2465121181"],"abstract_inverted_index":{"This":[0],"study":[1,47],"represents":[2],"the":[3,8,16],"first":[4],"effort":[5],"to":[6,22,46],"extend":[7],"molecular":[9],"characterizations":[10],"towards":[11],"pathway":[12,29,39,48,63],"level":[13],"descriptions":[14],"across":[15,53,79],"family":[17],"of":[18,59],"cancers.":[19,54],"In":[20],"addition":[21],"providing":[23],"a":[24,37],"proof-of-concept":[25],"for":[26,71,88],"single":[27],"sample":[28],"aberration":[30,40,49],"analysis":[31],"in":[32],"this":[33],"context,":[34],"we":[35],"present":[36],"comprehensive":[38],"dataset":[41],"that":[42],"can":[43],"be":[44],"used":[45],"patterns":[50],"within":[51],"or":[52,76,86],"Significant":[55],"similarities":[56],"between":[57],"subgroups":[58],"different":[60],"cancers":[61],"on":[62],"and":[64],"gene":[65],"expression":[66],"levels":[67],"provide":[68],"interesting":[69],"hypotheses":[70],"understanding":[72],"variable":[73],"drug":[74],"response,":[75],"transferring":[77],"treatments":[78],"diseases":[80],"by":[81],"identifying":[82],"common":[83],"druggable":[84],"pathways":[85],"genes,":[87],"example.":[89]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
