{"id":"https://openalex.org/W2026725606","doi":"https://doi.org/10.1186/1752-0509-7-88","title":"An online model composition tool for system biology models","display_name":"An online model composition tool for system biology models","publication_year":2013,"publication_date":"2013-09-05","ids":{"openalex":"https://openalex.org/W2026725606","doi":"https://doi.org/10.1186/1752-0509-7-88","mag":"2026725606","pmid":"https://pubmed.ncbi.nlm.nih.gov/24006914"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-88","pdf_url":"https://link.springer.com/content/pdf/10.1186/1752-0509-7-88.pdf","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/1752-0509-7-88.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034533391","display_name":"Sarp A Coskun","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarp A Coskun","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA. tekin@case.edu","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA. tekin@case.edu","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090836372","display_name":"A. Erc\u00fcment \u00c7i\u00e7ek","orcid":"https://orcid.org/0000-0001-8613-6619"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A Ercument Cicek","raw_affiliation_strings":["Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA","Lane Center for Computational Biology, Carnegie Mellon University,Pittsburgh,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University,Pittsburgh,USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084661497","display_name":"Nicola Lai","orcid":"https://orcid.org/0000-0002-3436-289X"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicola Lai","raw_affiliation_strings":["Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA","[Department of Biomedical Engineering, Case Western Reserve University, Cleveland, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"[Department of Biomedical Engineering, Case Western Reserve University, Cleveland, USA]","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061756444","display_name":"Ranjan K. Dash","orcid":"https://orcid.org/0000-0001-6751-0679"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ranjan K Dash","raw_affiliation_strings":["Department of Physiology, Medical College of Wisconsin, Milwaukee, WI, USA","Dept. of Physiology, Medical College of Wisconsin, Milwaukee, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology, Medical College of Wisconsin, Milwaukee, WI, USA","institution_ids":["https://openalex.org/I204308271"]},{"raw_affiliation_string":"Dept. of Physiology, Medical College of Wisconsin, Milwaukee, USA","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013424429","display_name":"Z. Meral \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z Meral Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016412404","display_name":"G\u00fcltekin \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gultekin Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016412404"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.4127,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.62491104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"88","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5131999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5131999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13286","display_name":"Modeling and Simulation Systems","score":0.1282999962568283,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.07649999856948853,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.706486165523529},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5189880728721619},{"id":"https://openalex.org/keywords/composition","display_name":"Composition (language)","score":0.5134493112564087},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5125024318695068},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.4610857367515564},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44406065344810486},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3236643671989441}],"concepts":[{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.706486165523529},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5189880728721619},{"id":"https://openalex.org/C40231798","wikidata":"https://www.wikidata.org/wiki/Q1333743","display_name":"Composition (language)","level":2,"score":0.5134493112564087},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5125024318695068},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.4610857367515564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44406065344810486},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3236643671989441},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004734","descriptor_name":"Energy Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004734","descriptor_name":"Energy Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004734","descriptor_name":"Energy Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-7-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-88","pdf_url":"https://link.springer.com/content/pdf/10.1186/1752-0509-7-88.pdf","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24006914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24006914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2834786","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3846440","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:iris.unica.it:11584/278896","is_oa":true,"landing_page_url":"https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-7-88","pdf_url":null,"source":{"id":"https://openalex.org/S4377196293","display_name":"UNICA IRIS Institutional Research Information System (University of Cagliari)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172446870","host_organization_name":"University of Cagliari","host_organization_lineage":["https://openalex.org/I172446870"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3846440","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3846440","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-88","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-88","pdf_url":"https://link.springer.com/content/pdf/10.1186/1752-0509-7-88.pdf","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1245891105","display_name":null,"funder_award_id":"GM088823","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1846124065","display_name":null,"funder_award_id":"DBI 0849956","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G377211275","display_name":"A Web-Based Data Source for Metabolomics Analysis","funder_award_id":"0849956","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4990787439","display_name":null,"funder_award_id":"CRI 0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5173077141","display_name":"Database-Enabled Tools for Regulatory Metabolic Networks","funder_award_id":"0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6727188481","display_name":"CRI: Infrastructure for Managing and Analyzing Large Scale Biological Data via Utility Computing","funder_award_id":"0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7678081043","display_name":null,"funder_award_id":"GM088823","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8557371565","display_name":null,"funder_award_id":"DBI 0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2026725606.pdf","grobid_xml":"https://content.openalex.org/works/W2026725606.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W56708077","https://openalex.org/W94414389","https://openalex.org/W196588618","https://openalex.org/W1533710340","https://openalex.org/W1554473008","https://openalex.org/W1970851578","https://openalex.org/W1975385846","https://openalex.org/W1978435670","https://openalex.org/W2013641696","https://openalex.org/W2017463975","https://openalex.org/W2020561965","https://openalex.org/W2021123893","https://openalex.org/W2038264484","https://openalex.org/W2045808901","https://openalex.org/W2090469206","https://openalex.org/W2095304455","https://openalex.org/W2097852199","https://openalex.org/W2098769288","https://openalex.org/W2102653059","https://openalex.org/W2117822125","https://openalex.org/W2120043685","https://openalex.org/W2120599990","https://openalex.org/W2124236793","https://openalex.org/W2126662515","https://openalex.org/W2131294353","https://openalex.org/W2133938042","https://openalex.org/W2134221731","https://openalex.org/W2136970290","https://openalex.org/W2147714160","https://openalex.org/W2155967165","https://openalex.org/W2160751597","https://openalex.org/W2170776520","https://openalex.org/W2187198735","https://openalex.org/W2916475656","https://openalex.org/W4238108613"],"related_works":["https://openalex.org/W4386563820","https://openalex.org/W631732704","https://openalex.org/W1968058641","https://openalex.org/W2155261113","https://openalex.org/W1748979965","https://openalex.org/W3199870583","https://openalex.org/W1593256703","https://openalex.org/W4254550161","https://openalex.org/W5284979","https://openalex.org/W4245853730"],"abstract_inverted_index":{"BACKGROUND:":[0],"There":[1],"are":[2],"multiple":[3],"representation":[4],"formats":[5],"for":[6,51,145,246,249],"Systems":[7,13,36,89],"Biology":[8,14,37],"computational":[9,33,70],"models,":[10],"and":[11,31,44,68,77,154,184,258],"the":[12,21,41,75,80,86,103,118,133,170,200,213,233,262],"Markup":[15],"Language":[16],"(SBML)":[17],"is":[18,26,48],"one":[19],"of":[20,79,106,132,165,212,261],"most":[22],"widely":[23],"used.":[24],"SBML":[25,58,191,214,236],"used":[27,206],"to":[28,101,136,147,152,225,256],"capture,":[29],"store,":[30],"distribute":[32],"models":[34,100,151,166,183,239,260],"by":[35,162],"data":[38],"sources":[39],"(e.g.,":[40],"BioModels":[42,181,263],"Database)":[43],"researchers.":[45],"Therefore,":[46],"there":[47],"a":[49,129,143,160,176,185,242],"need":[50],"all-in-one":[52],"web-based":[53],"solutions":[54],"that":[55,116,127,158,179,189],"support":[56,117],"advance":[57],"functionalities":[59],"such":[60],"as":[61,142,265],"uploading,":[62],"editing,":[63],"composing,":[64],"visualizing,":[65],"simulating,":[66],"querying,":[67],"browsing":[69],"models.":[71,110,194],"RESULTS:":[72],"We":[73,111],"present":[74,113],"design":[76],"implementation":[78],"Model":[81,124,196],"Composition":[82],"Tool":[83,141,157],"(Interface)":[84],"within":[85],"PathCase-SB":[87],"(PathCase":[88],"Biology)":[90],"web":[91,177,187],"portal.":[92],"The":[93],"tool":[94,198],"helps":[95],"users":[96,146,253],"compose":[97],"systems":[98,108,228],"biology":[99,109,229],"facilitate":[102],"complex":[104],"process":[105],"merging":[107],"also":[112],"three":[114,202],"tools":[115],"model":[119],"composition":[120,197],"tool,":[121],"namely,":[122],"(1)":[123],"Simulation":[125],"Interface":[126],"generates":[128],"visual":[130],"plot":[131],"simulation":[134],"according":[135],"user's":[137],"input,":[138],"(2)":[139],"iModel":[140],"platform":[144],"upload":[148],"their":[149],"own":[150],"compose,":[153],"(3)":[155],"SimCom":[156],"provides":[159],"side":[161,163],"comparison":[164],"being":[167],"composed":[168],"in":[169],"same":[171],"pathway.":[172],"Finally,":[173],"we":[174],"provide":[175],"site":[178,188],"hosts":[180,190],"Database":[182,264],"separate":[186],"Test":[192,237],"Suite":[193,238],"CONCLUSIONS:":[195],"(and":[199],"other":[201],"tools)":[203],"can":[204],"be":[205,241],"with":[207],"little":[208],"or":[209,221],"no":[210],"knowledge":[211],"document":[215],"structure.":[216],"For":[217],"this":[218],"reason,":[219],"students":[220],"anyone":[222],"who":[223],"wants":[224],"learn":[226],"about":[227],"will":[230,240,254],"benefit":[231],"from":[232],"described":[234],"functionalities.":[235],"nice":[243],"starting":[244],"point":[245],"beginners.":[247],"And,":[248],"more":[250],"advanced":[251],"purposes,":[252],"able":[255],"access":[257],"employ":[259],"well.":[266]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
