{"id":"https://openalex.org/W2148535591","doi":"https://doi.org/10.1186/1752-0509-7-67","title":"Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate","display_name":"Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate","publication_year":2013,"publication_date":"2013-07-24","ids":{"openalex":"https://openalex.org/W2148535591","doi":"https://doi.org/10.1186/1752-0509-7-67","mag":"2148535591","pmid":"https://pubmed.ncbi.nlm.nih.gov/23883471"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-67","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-67","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-67","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068402419","display_name":"Marta N. Bogda\u0142","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119410","display_name":"Institute of Fundamental Technological Research","ror":"https://ror.org/03fs4aq04","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marta N Bogda\u0142","raw_affiliation_strings":["Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw 02-106, Poland","Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw 02-106, Poland","institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]},{"raw_affiliation_string":"Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland","institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085228117","display_name":"Beata Hat","orcid":"https://orcid.org/0000-0002-7049-5729"},"institutions":[{"id":"https://openalex.org/I4210119410","display_name":"Institute of Fundamental Technological Research","ror":"https://ror.org/03fs4aq04","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Beata Hat","raw_affiliation_strings":["Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland","institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041747421","display_name":"Marek Kocha\u0144czyk","orcid":"https://orcid.org/0000-0003-1215-3920"},"institutions":[{"id":"https://openalex.org/I4210119410","display_name":"Institute of Fundamental Technological Research","ror":"https://ror.org/03fs4aq04","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marek Kocha\u0144czyk","raw_affiliation_strings":["Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland","institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024103451","display_name":"Tomasz Lipniacki","orcid":"https://orcid.org/0000-0002-3488-2561"},"institutions":[{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]},{"id":"https://openalex.org/I4210119410","display_name":"Institute of Fundamental Technological Research","ror":"https://ror.org/03fs4aq04","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]}],"countries":["PL","US"],"is_corresponding":false,"raw_author_name":"Tomasz Lipniacki","raw_affiliation_strings":["Department of Statistics, Rice University, Houston, TX, 77025, USA","Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, Houston, TX, 77025, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, 02-106, Poland","institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068402419"],"corresponding_institution_ids":["https://openalex.org/I4210119410","https://openalex.org/I99542240"],"apc_list":null,"apc_paid":null,"fwci":1.6444,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.83882107,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10294","display_name":"Cell death mechanisms and regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10294","display_name":"Cell death mechanisms and regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12672","display_name":"Phagocytosis and Immune Regulation","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/apoptosis","display_name":"Apoptosis","score":0.6831146478652954},{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.6635181903839111},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.46564731001853943},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.44015809893608093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3673168420791626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36334285140037537},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13157609105110168}],"concepts":[{"id":"https://openalex.org/C190283241","wikidata":"https://www.wikidata.org/wiki/Q14599311","display_name":"Apoptosis","level":2,"score":0.6831146478652954},{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.6635181903839111},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.46564731001853943},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.44015809893608093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3673168420791626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36334285140037537},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13157609105110168},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039301","descriptor_name":"Computers, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039301","descriptor_name":"Computers, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039301","descriptor_name":"Computers, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051020","descriptor_name":"bcl-X Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051020","descriptor_name":"bcl-X Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051020","descriptor_name":"bcl-X Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-7-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-67","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-67","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:23883471","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23883471","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2744185","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3750306","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3750306","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3750306","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-67","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-67","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-67","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148535591.pdf","grobid_xml":"https://content.openalex.org/works/W2148535591.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W65521289","https://openalex.org/W1535426243","https://openalex.org/W1607777232","https://openalex.org/W1644794975","https://openalex.org/W1870720170","https://openalex.org/W1942214720","https://openalex.org/W1965071591","https://openalex.org/W1966861384","https://openalex.org/W1971411560","https://openalex.org/W1972146095","https://openalex.org/W1976720365","https://openalex.org/W1978518304","https://openalex.org/W1979012323","https://openalex.org/W1979634817","https://openalex.org/W1984547206","https://openalex.org/W1988756673","https://openalex.org/W1989095713","https://openalex.org/W1991865867","https://openalex.org/W1995117660","https://openalex.org/W1995354282","https://openalex.org/W1995773170","https://openalex.org/W1999014427","https://openalex.org/W1999163644","https://openalex.org/W2000011855","https://openalex.org/W2002010679","https://openalex.org/W2006652614","https://openalex.org/W2008715871","https://openalex.org/W2008757142","https://openalex.org/W2008841394","https://openalex.org/W2009347496","https://openalex.org/W2009966959","https://openalex.org/W2010134143","https://openalex.org/W2013075289","https://openalex.org/W2018116689","https://openalex.org/W2024334150","https://openalex.org/W2024996523","https://openalex.org/W2025277638","https://openalex.org/W2026057304","https://openalex.org/W2027217537","https://openalex.org/W2027395744","https://openalex.org/W2035188342","https://openalex.org/W2037960329","https://openalex.org/W2042316019","https://openalex.org/W2045086385","https://openalex.org/W2050981751","https://openalex.org/W2051258629","https://openalex.org/W2053864637","https://openalex.org/W2054208935","https://openalex.org/W2056891806","https://openalex.org/W2057713336","https://openalex.org/W2058631780","https://openalex.org/W2061497413","https://openalex.org/W2065855687","https://openalex.org/W2067751798","https://openalex.org/W2068382906","https://openalex.org/W2073571990","https://openalex.org/W2075334136","https://openalex.org/W2075941967","https://openalex.org/W2077319000","https://openalex.org/W2079541630","https://openalex.org/W2082979850","https://openalex.org/W2087877138","https://openalex.org/W2089574530","https://openalex.org/W2090326380","https://openalex.org/W2091545748","https://openalex.org/W2093628776","https://openalex.org/W2094052642","https://openalex.org/W2094068658","https://openalex.org/W2097007474","https://openalex.org/W2097767970","https://openalex.org/W2098276373","https://openalex.org/W2099000660","https://openalex.org/W2102369096","https://openalex.org/W2103616303","https://openalex.org/W2109183374","https://openalex.org/W2113126782","https://openalex.org/W2119683782","https://openalex.org/W2125886217","https://openalex.org/W2130361718","https://openalex.org/W2130698963","https://openalex.org/W2131532199","https://openalex.org/W2138892400","https://openalex.org/W2141997480","https://openalex.org/W2142713529","https://openalex.org/W2142911981","https://openalex.org/W2143067729","https://openalex.org/W2145915855","https://openalex.org/W2150048195","https://openalex.org/W2150097377","https://openalex.org/W2152247516","https://openalex.org/W2160340008","https://openalex.org/W2161641464","https://openalex.org/W2166467949","https://openalex.org/W2166601968","https://openalex.org/W2166625995","https://openalex.org/W2167921512","https://openalex.org/W2170743452","https://openalex.org/W2318612270"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Our":[0],"study":[1],"sheds":[2],"light":[3],"on":[4,19,22],"possible":[5],"signal":[6],"integration":[7],"mechanisms":[8],"in":[9,42],"cells,":[10],"and":[11,21,46],"spans":[12],"a":[13,60],"bridge":[14],"between":[15],"modeling":[16],"approaches":[17],"based":[18],"ODEs":[20],"Boolean":[23],"logic.":[24],"In":[25],"the":[26,34,51],"proposed":[27],"scheme,":[28],"logic":[29],"gates":[30],"switching":[31],"results":[32],"from":[33],"change":[35],"of":[36,39],"relative":[37],"abundances":[38],"interacting":[40],"proteins":[41],"response":[43],"to":[44],"signals":[45],"involves":[47],"system":[48,53],"bistability.":[49],"Consequently,":[50],"regulatory":[52],"may":[54],"process":[55],"two":[56],"analogous":[57],"inputs":[58],"into":[59],"digital":[61],"survive-or-die":[62],"decision.":[63]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
