{"id":"https://openalex.org/W2141245480","doi":"https://doi.org/10.1186/1752-0509-7-50","title":"Consensus and conflict cards for metabolic pathway databases","display_name":"Consensus and conflict cards for metabolic pathway databases","publication_year":2013,"publication_date":"2013-06-26","ids":{"openalex":"https://openalex.org/W2141245480","doi":"https://doi.org/10.1186/1752-0509-7-50","mag":"2141245480","pmid":"https://pubmed.ncbi.nlm.nih.gov/23803311"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-50","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-50","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-50","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-50","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006687544","display_name":"Miranda D. Stobbe","orcid":"https://orcid.org/0000-0002-2536-0753"},"institutions":[{"id":"https://openalex.org/I2802928900","display_name":"Amsterdam UMC Location University of Amsterdam","ror":"https://ror.org/03t4gr691","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2802928900","https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Miranda D Stobbe","raw_affiliation_strings":["Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, PO Box 22700, Amsterdam 1100 DE, the Netherlands","Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, PO Box 22700, Amsterdam 1100 DE, the Netherlands","institution_ids":["https://openalex.org/I2802928900","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands","institution_ids":["https://openalex.org/I2802928900","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Morris A Swertz","raw_affiliation_strings":["Genomics Coordination Center, University Medical Center Groningen & University of Groningen, P.O. Box 30001, Groningen, 9700 RB, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, University Medical Center Groningen & University of Groningen, P.O. Box 30001, Groningen, 9700 RB, the Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074725115","display_name":"Ines Thiele","orcid":"https://orcid.org/0000-0002-8071-7110"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Ines Thiele","raw_affiliation_strings":["Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 7, avenue des Hauts-Fourneaux, Esch-sur-Alzette, L-4362, Luxembourg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 7, avenue des Hauts-Fourneaux, Esch-sur-Alzette, L-4362, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077990611","display_name":"Trebor Rengaw","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Trebor Rengaw","raw_affiliation_strings":["Genomics Coordination Center, University Medical Center Groningen & University of Groningen, P.O. Box 30001, Groningen, 9700 RB, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, University Medical Center Groningen & University of Groningen, P.O. Box 30001, Groningen, 9700 RB, the Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073421485","display_name":"Antoine H. C. van Kampen","orcid":"https://orcid.org/0000-0003-1025-7232"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I2802928900","display_name":"Amsterdam UMC Location University of Amsterdam","ror":"https://ror.org/03t4gr691","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2802928900","https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I4210129165","display_name":"General Electric (Netherlands)","ror":"https://ror.org/03q3a0475","country_code":"NL","type":"company","lineage":["https://openalex.org/I1332737386","https://openalex.org/I4210129165"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Antoine HC van Kampen","raw_affiliation_strings":["Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands","Biosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands","Netherlands Consortium for Systems Biology, University of Amsterdam, P.O. Box 94215, Amsterdam, 1090 GE, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands","institution_ids":["https://openalex.org/I2802928900","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Biosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, the Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]},{"raw_affiliation_string":"Netherlands Consortium for Systems Biology, University of Amsterdam, P.O. Box 94215, Amsterdam, 1090 GE, the Netherlands","institution_ids":["https://openalex.org/I4210129165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027561354","display_name":"Perry D. Moerland","orcid":"https://orcid.org/0000-0002-2357-3659"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I2802928900","display_name":"Amsterdam UMC Location University of Amsterdam","ror":"https://ror.org/03t4gr691","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2802928900","https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Perry D Moerland","raw_affiliation_strings":["Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, P.O. Box 22700, Amsterdam, 1100 DE, the Netherlands","institution_ids":["https://openalex.org/I2802928900","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, Nijmegen, 6525 GA, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027561354"],"corresponding_institution_ids":["https://openalex.org/I2801582894","https://openalex.org/I2802928900","https://openalex.org/I887064364"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":1.2381,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.79127136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"50","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.8968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.037700001150369644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6098559498786926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4736517667770386},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4239184260368347},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42004239559173584},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3716632127761841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3218131363391876}],"concepts":[{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6098559498786926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4736517667770386},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4239184260368347},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42004239559173584},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3716632127761841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3218131363391876}],"mesh":[{"descriptor_ui":"D003220","descriptor_name":"Conflict, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003220","descriptor_name":"Conflict, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003220","descriptor_name":"Conflict, Psychological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1186/1752-0509-7-50","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-50","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-50","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:23803311","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23803311","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/ccc53398-c5fe-4d46-b203-16eb7a435b4f","is_oa":false,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/ccc53398-c5fe-4d46-b203-16eb7a435b4f","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Stobbe, M D, Swertz, M A, Thiele, I, Rengaw, T, van Kampen, A H C & Moerland, P D 2013, 'Consensus and conflict cards for metabolic pathway databases', BMC systems biology, vol. 7, no. 1, pp. 50. https://doi.org/10.1186/1752-0509-7-50","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.rug.nl:openaire/58ba474d-e829-4b43-a75f-5f23a3e59e44","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/58ba474d-e829-4b43-a75f-5f23a3e59e44","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Stobbe, M D, Swertz, M A, Thiele, I, Rengaw, T, van Kampen, A H C & Moerland, P D 2013, 'Consensus and conflict cards for metabolic pathway databases', BMC Systems Biology, vol. 7, 50. https://doi.org/10.1186/1752-0509-7-50","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/609abe5c-4035-4ab2-bbc5-b8ab03cebcb4","is_oa":false,"landing_page_url":"https://pure.amc.nl/en/publications/consensus-and-conflict-cards-for-metabolic-pathway-databases(609abe5c-4035-4ab2-bbc5-b8ab03cebcb4).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC systems biology, 7(1). BioMed Central","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/a2d883c8-2fe0-4a60-a10c-0f48a64d4503","is_oa":false,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/consensus-and-conflict-cards-for-metabolic-pathway-databases(a2d883c8-2fe0-4a60-a10c-0f48a64d4503).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:dare.uva.nl:publications/a2d883c8-2fe0-4a60-a10c-0f48a64d4503","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/consensus-and-conflict-cards-for-metabolic-pathway-databases(a2d883c8-2fe0-4a60-a10c-0f48a64d4503).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stobbe, M D, Swertz, M A, Thiele, I, Rengaw, T, van Kampen, A H C & Moerland, P D 2013, 'Consensus and conflict cards for metabolic pathway databases', BMC Systems Biology, vol. 7, pp. 50. https://doi.org/10.1186/1752-0509-7-50","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2702384","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3703255","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/13030","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/13030","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 7, 50 (2013-06-26)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:www.hirsla.lsh.is:2336/556478","is_oa":true,"landing_page_url":"http://hdl.handle.net/2336/556478","pdf_url":null,"source":{"id":"https://openalex.org/S4306401083","display_name":"Hirsla (Landsp\u00edtali University Hospital)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210106610","host_organization_name":"National University Hospital of Iceland","host_organization_lineage":["https://openalex.org/I4210106610"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-50","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-50","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-50","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.46000000834465027}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309991","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03"},{"id":"https://openalex.org/F4320310700","display_name":"Universit\u00e9 du Luxembourg","ror":"https://ror.org/036x5ad56"},{"id":"https://openalex.org/F4320320933","display_name":"Rijksuniversiteit Groningen","ror":"https://ror.org/012p63287"},{"id":"https://openalex.org/F4320321008","display_name":"Universiteit van Amsterdam","ror":"https://ror.org/04dkp9463"},{"id":"https://openalex.org/F4320323105","display_name":"Universitair Medisch Centrum Groningen","ror":"https://ror.org/03cv38k47"},{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141245480.pdf","grobid_xml":"https://content.openalex.org/works/W2141245480.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1561585380","https://openalex.org/W1921967953","https://openalex.org/W1964584858","https://openalex.org/W1998767819","https://openalex.org/W2010502047","https://openalex.org/W2017138237","https://openalex.org/W2028133290","https://openalex.org/W2035761729","https://openalex.org/W2041115195","https://openalex.org/W2044621879","https://openalex.org/W2047632644","https://openalex.org/W2049963771","https://openalex.org/W2063377610","https://openalex.org/W2075283200","https://openalex.org/W2080461503","https://openalex.org/W2081010896","https://openalex.org/W2082202339","https://openalex.org/W2085945924","https://openalex.org/W2098824895","https://openalex.org/W2102899487","https://openalex.org/W2104108767","https://openalex.org/W2114661156","https://openalex.org/W2118147999","https://openalex.org/W2132218677","https://openalex.org/W2133510724","https://openalex.org/W2134394193","https://openalex.org/W2141356165","https://openalex.org/W2158440231","https://openalex.org/W2160648343","https://openalex.org/W2164298117","https://openalex.org/W2170940180"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W5284979","https://openalex.org/W4245853730"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,17,199],"metabolic":[2,116,197],"network":[3],"of":[4,19,68,78,114,164,185,195,212,222],"H.":[5],"sapiens":[6],"and":[7,43,52,70,129,166,171,225],"many":[8],"other":[9],"organisms":[10],"is":[11,90],"described":[12],"in":[13,130,188],"multiple":[14],"pathway":[15,150,169],"databases.":[16,151],"level":[18],"agreement":[20],"between":[21,168],"these":[22,33],"descriptions,":[23],"however,":[24,59],"has":[25],"proven":[26],"to":[27,36,74,107,133,156,177],"be":[28,122,210],"low.":[29],"We":[30,64],"can":[31,121,154],"use":[32],"different":[34,125],"descriptions":[35],"our":[37],"advantage":[38],"by":[39,124,160],"identifying":[40,189],"conflicting":[41],"information":[42],"combining":[44],"their":[45],"knowledge":[46,207],"into":[47],"a":[48,93,115,137,143,196,229],"single,":[49],"more":[50,53],"accurate,":[51],"complete":[54],"description.":[55],"This":[56],"task":[57],"is,":[58],"far":[60],"from":[61,118],"trivial.":[62],"RESULTS:":[63],"introduce":[65],"the":[66,80,111,162,173,183,186,192,216,220,226],"concept":[67],"Consensus":[69],"Conflict":[71],"Cards":[72],"(C\u2082Cards)":[73],"provide":[75],"concise":[76],"overviews":[77,200],"what":[79,131],"databases":[81,170],"do":[82,84],"or":[83,98],"not":[85],"agree":[86],"on.":[87],"Each":[88],"card":[89],"centered":[91],"at":[92],"single":[94],"gene,":[95],"EC":[96],"number":[97],"reaction.":[99],"These":[100],"three":[101],"complementary":[102],"perspectives":[103],"make":[104],"it":[105],"possible":[106],"distinguish":[108],"disagreements":[109,190],"on":[110,127,191],"underlying":[112,193],"biology":[113,194],"process":[117],"differences":[119],"that":[120,208],"explained":[123],"decisions":[126],"how":[128],"detail":[132],"represent":[134],"knowledge.":[135],"As":[136],"proof-of-concept,":[138],"we":[139],"implemented":[140],"C\u2082Cards(Human),":[141],"as":[142],"web":[144],"application":[145],"http://www.molgenis.org/c2cards,":[146],"covering":[147],"five":[148],"human":[149],"CONCLUSIONS:":[152],"C\u2082Cards":[153,187],"contribute":[155],"ongoing":[157],"reconciliation":[158],"efforts":[159],"simplifying":[161],"identification":[163],"consensus":[165],"conflicts":[167],"lowering":[172],"threshold":[174],"for":[175,228],"experts":[176],"contribute.":[178],"Several":[179],"case":[180],"studies":[181],"illustrate":[182],"potential":[184],"process.":[198],"may":[201],"also":[202],"point":[203],"out":[204],"controversial":[205],"biological":[206],"should":[209],"subject":[211],"further":[213],"research.":[214],"Finally,":[215],"examples":[217],"provided":[218],"emphasize":[219],"importance":[221],"manual":[223],"curation":[224],"need":[227],"broad":[230],"community":[231],"involvement.":[232]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
