{"id":"https://openalex.org/W2129325583","doi":"https://doi.org/10.1186/1752-0509-7-135","title":"SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools","display_name":"SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2129325583","doi":"https://doi.org/10.1186/1752-0509-7-135","mag":"2129325583","pmid":"https://pubmed.ncbi.nlm.nih.gov/24321545"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-135","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-135","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-135","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-135","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038231285","display_name":"Claudine Chaouiya","orcid":"https://orcid.org/0000-0003-2350-0756"},"institutions":[{"id":"https://openalex.org/I48057805","display_name":"Instituto Gulbenkian de Ci\u00eancia","ror":"https://ror.org/04b08hq31","country_code":"PT","type":"education","lineage":["https://openalex.org/I48057805"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Claudine Chaouiya","raw_affiliation_strings":["Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande 6, 2780-156 Oeiras, Portugal. chaouiya@igc.gulbenkian.pt","Instituto Gulbenkian de Ci\u00eancia; Oeiras, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande 6, 2780-156 Oeiras, Portugal. chaouiya@igc.gulbenkian.pt","institution_ids":["https://openalex.org/I48057805"]},{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia; Oeiras, Portugal","institution_ids":["https://openalex.org/I48057805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057783035","display_name":"Duncan B\u00e9renguier","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138206","display_name":"Institut de Math\u00e9matiques de Marseille","ror":"https://ror.org/042h2y225","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210138206","https://openalex.org/I4210141950","https://openalex.org/I4210142724"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Duncan B\u00e9renguier","raw_affiliation_strings":["Institut de Math\u00e9matiques de Luminy, Campus de Luminy, Case 907, 13288, Marseille Cedex 9, France","Institut de Math\u00e9matiques de Luminy, Campus de Luminy, Marseille Cedex 9, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Math\u00e9matiques de Luminy, Campus de Luminy, Case 907, 13288, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I4210138206"]},{"raw_affiliation_string":"Institut de Math\u00e9matiques de Luminy, Campus de Luminy, Marseille Cedex 9, France","institution_ids":["https://openalex.org/I4210138206"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049649026","display_name":"Sarah Keating","orcid":"https://orcid.org/0000-0002-3356-3542"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah M Keating","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054156724","display_name":"Aur\u00e9lien Naldi","orcid":"https://orcid.org/0000-0002-6495-2655"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Aur\u00e9lien Naldi","raw_affiliation_strings":["Center for Integrative Genomics, University of Lausanne, CH-1015, Lausanne, Switzerland","Center for Integrative Genomics University of Lausanne Lausanne Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Integrative Genomics, University of Lausanne, CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Center for Integrative Genomics University of Lausanne Lausanne Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058353197","display_name":"Martijn van Iersel","orcid":"https://orcid.org/0000-0002-5877-4338"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martijn P van Iersel","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002460040","display_name":"Nicol\u00e1s Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-9290-7894"},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Rodriguez","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK","The Babraham Institute, Babraham Research Campus, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK","institution_ids":["https://openalex.org/I1302113299"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"The Babraham Institute, Babraham Research Campus, UK","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, 72076, T\u00fcbingen, Germany","Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093-0412, USA","Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany","Department of Bioengineering, University of California San Diego, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093-0412, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I4210133661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109231643","display_name":"Finja B\u00fcchel","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Finja B\u00fcchel","raw_affiliation_strings":["Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, 72076, T\u00fcbingen, Germany","Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany,","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026372984","display_name":"Thomas Cokelaer","orcid":"https://orcid.org/0000-0001-6286-1138"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Cokelaer","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025351054","display_name":"Bryan Kowal","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Kowal","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","Department of Biochemistry, University of Nebraska Lincoln, Lincoln, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska Lincoln, Lincoln, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038914090","display_name":"Benjamin Wicks","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Wicks","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, 68182, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, 68182, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065746791","display_name":"Emanuel Gon\u00e7alves","orcid":"https://orcid.org/0000-0002-9967-5205"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emanuel Gon\u00e7alves","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057093594","display_name":"Julien Dorier","orcid":"https://orcid.org/0000-0002-6717-2451"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Dorier","raw_affiliation_strings":["Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, CH-1015, Lausanne, Switzerland","Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091649231","display_name":"Michel Le Page","orcid":"https://orcid.org/0000-0002-0671-2418"},"institutions":[{"id":"https://openalex.org/I118618916","display_name":"Universit\u00e9 Pierre Mend\u00e8s France","ror":"https://ror.org/02f7wz369","country_code":"FR","type":"education","lineage":["https://openalex.org/I118618916","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michel Page","raw_affiliation_strings":["IAE Grenoble, Universit\u00e9 Pierre-Mend\u00e8s-France, Domaine universitaire, BP, 47, 38040, Grenoble Cedex 9, France","INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, 655 avenue de l\u2019Europe, Montbonnot, 38334, Saint-Ismier Cedex, France","IAE Grenoble, Universit\u00e9 Pierre-Mend\u00e8s-France, Domaine universitaire, Grenoble Cedex 9, France","INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, Saint-Ismier Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IAE Grenoble, Universit\u00e9 Pierre-Mend\u00e8s-France, Domaine universitaire, BP, 47, 38040, Grenoble Cedex 9, France","institution_ids":["https://openalex.org/I118618916"]},{"raw_affiliation_string":"INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, 655 avenue de l\u2019Europe, Montbonnot, 38334, Saint-Ismier Cedex, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"IAE Grenoble, Universit\u00e9 Pierre-Mend\u00e8s-France, Domaine universitaire, Grenoble Cedex 9, France","institution_ids":["https://openalex.org/I118618916"]},{"raw_affiliation_string":"INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, Saint-Ismier Cedex, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025560387","display_name":"Pedro T. Monteiro","orcid":"https://orcid.org/0000-0002-7934-5495"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I48057805","display_name":"Instituto Gulbenkian de Ci\u00eancia","ror":"https://ror.org/04b08hq31","country_code":"PT","type":"education","lineage":["https://openalex.org/I48057805"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro T Monteiro","raw_affiliation_strings":["Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande 6, 2780-156, Oeiras, Portugal","Instituto de Engenharia de Sistemas e Computadores - Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Rua Alves Redol 9, 1000-029, Lisbon, Portugal","Instituto Gulbenkian de Ci\u00eancia, Oeiras, Portugal","Instituto de Engenharia de Sistemas e Computadores - Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia, Rua da Quinta Grande 6, 2780-156, Oeiras, Portugal","institution_ids":["https://openalex.org/I48057805"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores - Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Rua Alves Redol 9, 1000-029, Lisbon, Portugal","institution_ids":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"raw_affiliation_string":"Instituto Gulbenkian de Ci\u00eancia, Oeiras, Portugal","institution_ids":["https://openalex.org/I48057805"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores - Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), Lisbon, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062268813","display_name":"Axel von Kamp","orcid":"https://orcid.org/0000-0002-2956-7815"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Axel von Kamp","raw_affiliation_strings":["Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, D-39106, Magdeburg, Germany","Max Planck Institute for Dynamics of Complex Technical Systems;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, D-39106, Magdeburg, Germany","institution_ids":["https://openalex.org/I4210127568"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems;","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, CH-1015, Lausanne, Switzerland","Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, CH-1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss-Prot & Vital-IT group, SIB- Swiss Institute of Bioinformatics, Center for Integrative Genomics, University of Lausanne, Quartier Sorge - Batiment Genopode, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054406248","display_name":"Hidde de Jong","orcid":"https://orcid.org/0000-0002-2226-650X"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hidde de Jong","raw_affiliation_strings":["INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, 655 avenue de l\u2019Europe, Montbonnot, 38334, Saint-Ismier Cedex, France","INRIA Grenoble\u2014Rh\u00f4ne\u2010Alpes Saint Ismier Cedex France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble \u2013 Rh\u00f4ne-Alpes, 655 avenue de l\u2019Europe, Montbonnot, 38334, Saint-Ismier Cedex, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"INRIA Grenoble\u2014Rh\u00f4ne\u2010Alpes Saint Ismier Cedex France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016716446","display_name":"Michael Hucka","orcid":"https://orcid.org/0000-0001-9105-5960"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Hucka","raw_affiliation_strings":["Computing and Mathematical sciences, California Institute of Technology, Pasadena, CA, 91125, USA","Computing and Mathematical sciences, California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing and Mathematical sciences, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Computing and Mathematical sciences, California Institute of Technology, Pasadena, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080707502","display_name":"Steffen Klamt","orcid":"https://orcid.org/0000-0003-2563-7561"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Klamt","raw_affiliation_strings":["Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, D-39106, Magdeburg, Germany","Max Planck Institute for Dynamics of Complex Technical Systems;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, D-39106, Magdeburg, Germany","institution_ids":["https://openalex.org/I4210127568"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics of Complex Technical Systems;","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081933836","display_name":"Denis Thieffry","orcid":"https://orcid.org/0000-0003-0271-1757"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210129409","display_name":"Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/03mxktp47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210096427","https://openalex.org/I4210129409"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Denis Thieffry","raw_affiliation_strings":["Institut de Biologie de l\u2019Ecole Normale Sup\u00e9rieure (IBENS) - UMR CNRS 8197 - INSERM 1024 46 rue d\u2019Ulm, 75230, Paris Cedex 05, France","Institut de Biologie de l\u2019Ecole Normale Sup\u00e9rieure (IBENS) - UMR CNRS 8197 - INSERM 1024 46 rue d\u2019Ulm, Paris Cedex 05, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Biologie de l\u2019Ecole Normale Sup\u00e9rieure (IBENS) - UMR CNRS 8197 - INSERM 1024 46 rue d\u2019Ulm, 75230, Paris Cedex 05, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210129409"]},{"raw_affiliation_string":"Institut de Biologie de l\u2019Ecole Normale Sup\u00e9rieure (IBENS) - UMR CNRS 8197 - INSERM 1024 46 rue d\u2019Ulm, Paris Cedex 05, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210129409"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112438594","display_name":"Nicolas Le Nov\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Le Nov\u00e8re","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK","The Babraham Institute, Babraham Research Campus, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK","institution_ids":["https://openalex.org/I1302113299"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"The Babraham Institute, Babraham Research Campus, UK","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005499510","display_name":"Julio S\u00e1ez-Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-8552-8976"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Julio Saez-Rodriguez","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073371703","display_name":"Tom\u00e1\u0161 Helikar","orcid":"https://orcid.org/0000-0003-3653-1906"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Helikar","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","Department of Biochemistry, University of Nebraska Lincoln, Lincoln, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska Lincoln, Lincoln, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":23,"corresponding_author_ids":["https://openalex.org/A5005499510","https://openalex.org/A5038231285","https://openalex.org/A5073371703"],"corresponding_institution_ids":["https://openalex.org/I114395901","https://openalex.org/I1303153112","https://openalex.org/I48057805","https://openalex.org/I87048295"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":7.019,"has_fulltext":true,"cited_by_count":177,"citation_normalized_percentile":{"value":0.97918564,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"135","last_page":"135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2865000069141388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2865000069141388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.2442999929189682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1834000051021576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9886195659637451},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.8030855655670166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7431837916374207},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6565291881561279},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.6363016366958618},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.48812398314476013},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4704403281211853},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.46123480796813965},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4228821098804474},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4054696559906006},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3986128866672516},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.17262452840805054},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15644311904907227},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15014863014221191},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10461780428886414},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0830618143081665}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9886195659637451},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.8030855655670166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7431837916374207},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6565291881561279},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.6363016366958618},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.48812398314476013},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4704403281211853},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.46123480796813965},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4228821098804474},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4054696559906006},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3986128866672516},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.17262452840805054},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15644311904907227},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15014863014221191},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10461780428886414},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0830618143081665},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004815","descriptor_name":"Epidermal Growth Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004815","descriptor_name":"Epidermal Growth Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004815","descriptor_name":"Epidermal Growth Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004815","descriptor_name":"Epidermal Growth Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004815","descriptor_name":"Epidermal Growth Factor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014409","descriptor_name":"Tumor Necrosis Factor-alpha","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/1752-0509-7-135","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-135","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-135","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24321545","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24321545","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:iris.unil.ch:iris/145915","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/145915","pdf_url":"https://iris.unil.ch/bitstreams/481c5ec2-2b6b-4132-bce8-608893521652/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:authors.library.caltech.edu:43775","is_oa":true,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20140211-103736652","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:HAL:hal-00926033v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00926033","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 2013, 7 (1), pp.135. &#x27E8;10.1186/1752-0509-7-135&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2878318","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3892043","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3892043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3892043","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1867910","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0014-D14B-3","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:serval.unil.ch:BIB_9B75E0356BD8","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_9B75E0356BD8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, vol. 7, pp. 135","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-135","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-135","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-135","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2144373698","display_name":null,"funder_award_id":"BB/J019305/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2240538154","display_name":null,"funder_award_id":"LSHG-CT-2005-518254","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2919042891","display_name":null,"funder_award_id":"5R01DA030962","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G3005190885","display_name":"Automated multi-level modeling of biological systems considering physico-chemical constraints","funder_award_id":"332020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3148254941","display_name":null,"funder_award_id":"GM070923","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3394992377","display_name":null,"funder_award_id":"KBBE-2011-5","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3771654662","display_name":null,"funder_award_id":"GM070923","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4084023784","display_name":null,"funder_award_id":"R01-GM070923","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5326712626","display_name":null,"funder_award_id":"5R01DA030962","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6339133434","display_name":null,"funder_award_id":"PTDC/EIA-CCO/099229/2008","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6782187388","display_name":null,"funder_award_id":"0315756","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7181429030","display_name":"BioModels Database, the comprehensive resource for computational models in biology","funder_award_id":"BB/J019305/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7216406532","display_name":"From Data to Models: New Bioinformatics Methods and Tools for Data-Driven Predictive Dynamic Modelling in Biotechnological Applications","funder_award_id":"289434","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320338366","display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129325583.pdf","grobid_xml":"https://content.openalex.org/works/W2129325583.grobid-xml"},"referenced_works_count":90,"referenced_works":["https://openalex.org/W54191953","https://openalex.org/W58125149","https://openalex.org/W100617303","https://openalex.org/W174102300","https://openalex.org/W642713173","https://openalex.org/W1489391022","https://openalex.org/W1535220465","https://openalex.org/W1547909247","https://openalex.org/W1807981783","https://openalex.org/W1893780978","https://openalex.org/W1969547738","https://openalex.org/W1973242626","https://openalex.org/W1980461209","https://openalex.org/W1981898075","https://openalex.org/W1983099607","https://openalex.org/W1986040959","https://openalex.org/W1986750371","https://openalex.org/W1991303552","https://openalex.org/W1991980854","https://openalex.org/W1994877332","https://openalex.org/W1998356614","https://openalex.org/W2000982470","https://openalex.org/W2006088003","https://openalex.org/W2008633581","https://openalex.org/W2009437679","https://openalex.org/W2011835017","https://openalex.org/W2014566660","https://openalex.org/W2017218687","https://openalex.org/W2018519939","https://openalex.org/W2022624450","https://openalex.org/W2023106695","https://openalex.org/W2031369606","https://openalex.org/W2038385512","https://openalex.org/W2038645071","https://openalex.org/W2042459594","https://openalex.org/W2046538693","https://openalex.org/W2053961182","https://openalex.org/W2054039423","https://openalex.org/W2059110753","https://openalex.org/W2061391666","https://openalex.org/W2065546165","https://openalex.org/W2069157810","https://openalex.org/W2069233518","https://openalex.org/W2073903631","https://openalex.org/W2075269458","https://openalex.org/W2076935369","https://openalex.org/W2078734575","https://openalex.org/W2080721009","https://openalex.org/W2090020814","https://openalex.org/W2092599114","https://openalex.org/W2095304455","https://openalex.org/W2095433609","https://openalex.org/W2102414397","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2105841205","https://openalex.org/W2112332161","https://openalex.org/W2113777491","https://openalex.org/W2114518254","https://openalex.org/W2117949454","https://openalex.org/W2121149194","https://openalex.org/W2123783513","https://openalex.org/W2124419982","https://openalex.org/W2126877057","https://openalex.org/W2127020923","https://openalex.org/W2127808973","https://openalex.org/W2130362363","https://openalex.org/W2131463591","https://openalex.org/W2132935366","https://openalex.org/W2133552211","https://openalex.org/W2134221731","https://openalex.org/W2136559804","https://openalex.org/W2139504329","https://openalex.org/W2144501202","https://openalex.org/W2145435867","https://openalex.org/W2145899141","https://openalex.org/W2146009166","https://openalex.org/W2150908245","https://openalex.org/W2153316724","https://openalex.org/W2157573465","https://openalex.org/W2159130719","https://openalex.org/W2161636210","https://openalex.org/W2162144833","https://openalex.org/W2167334954","https://openalex.org/W2167909734","https://openalex.org/W2301501567","https://openalex.org/W2340735175","https://openalex.org/W2913459036","https://openalex.org/W3101174921","https://openalex.org/W3105538867"],"related_works":["https://openalex.org/W2150908245","https://openalex.org/W2211443823","https://openalex.org/W2043776573","https://openalex.org/W3091139413","https://openalex.org/W2152827261","https://openalex.org/W2367709763","https://openalex.org/W2026725606","https://openalex.org/W2735157934","https://openalex.org/W2097410126","https://openalex.org/W2115343689"],"abstract_inverted_index":{"BACKGROUND:":[0],"Qualitative":[1,80],"frameworks,":[2],"especially":[3],"those":[4],"based":[5],"on":[6,191,201],"the":[7,74,87,104,112,125,130,135,138,149,152,157,170,185,192,202,205],"logical":[8],"discrete":[9],"formalism,":[10],"are":[11,38],"increasingly":[12],"used":[13],"to":[14,57,64,128,162,187],"model":[15,144],"regulatory":[16,212],"and":[17,35,204,213],"signalling":[18,117,214],"networks.":[19,44,101,215],"A":[20],"major":[21],"advantage":[22],"of":[23,42,86,96,99,106,114,140,151,160,172,178,194,207,211],"these":[24],"frameworks":[25],"is":[26],"that":[27,36,53],"they":[28,37],"do":[29],"not":[30],"require":[31],"precise":[32],"quantitative":[33],"data,":[34],"well-suited":[39],"for":[40,93,137],"studies":[41],"large":[43],"While":[45],"numerous":[46],"groups":[47],"have":[48],"developed":[49],"specific":[50,116],"computational":[51,196],"tools":[52],"provide":[54],"original":[55],"methods":[56],"analyse":[58,163],"qualitative":[59,66,97,164,173,209],"models,":[60],"a":[61,115,176],"standard":[62,91],"format":[63,133,153],"exchange":[65,171],"models":[67,98,107,174,210],"has":[68,184],"been":[69],"missing.":[70],"RESULTS:":[71],"We":[72,102],"present":[73],"Systems":[75],"Biology":[76],"Markup":[77],"Language":[78],"(SBML)":[79],"Models":[81],"Package":[82],"(\"qual\"),":[83],"an":[84,142],"extension":[85],"SBML":[88,109,131,167,182],"Level":[89],"3":[90],"designed":[92],"computer":[94],"representation":[95],"biological":[100],"demonstrate":[103],"interoperability":[105],"via":[108],"qual":[110,132,168,183],"through":[111],"analysis":[113,206],"network":[118],"by":[119],"three":[120],"independent":[121],"software":[122,180],"tools.":[123,181],"Furthermore,":[124],"collective":[126],"effort":[127],"define":[129],"paved":[134],"way":[136],"development":[139,159,193],"LogicalModel,":[141],"open-source":[143],"library,":[145],"which":[146],"will":[147],"facilitate":[148],"adoption":[150],"as":[154,156,198,200],"well":[155,199],"collaborative":[158,189],"algorithms":[161],"models.":[165],"CONCLUSIONS:":[166],"allows":[169],"among":[175],"number":[177],"complementary":[179],"potential":[186],"promote":[188],"work":[190],"novel":[195],"approaches,":[197],"specification":[203],"comprehensive":[208]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
