{"id":"https://openalex.org/W2126695841","doi":"https://doi.org/10.1186/1752-0509-7-11","title":"A model of HIV drug resistance driven by heterogeneities in host immunity and adherence patterns","display_name":"A model of HIV drug resistance driven by heterogeneities in host immunity and adherence patterns","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2126695841","doi":"https://doi.org/10.1186/1752-0509-7-11","mag":"2126695841","pmid":"https://pubmed.ncbi.nlm.nih.gov/23379669"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-11","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-11","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-11","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058436429","display_name":"Anna Bershteyn","orcid":"https://orcid.org/0000-0002-6604-7093"},"institutions":[{"id":"https://openalex.org/I4210161429","display_name":"Intellectual Ventures (United States)","ror":"https://ror.org/05evsnd79","country_code":"US","type":"company","lineage":["https://openalex.org/I4210161429"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anna Bershteyn","raw_affiliation_strings":["Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA. abershteyn@intven.com","Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA"],"affiliations":[{"raw_affiliation_string":"Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA. abershteyn@intven.com","institution_ids":["https://openalex.org/I4210161429"]},{"raw_affiliation_string":"Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA","institution_ids":["https://openalex.org/I4210161429"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107988048","display_name":"Philip A. Eckhoff","orcid":"https://orcid.org/0000-0002-1278-3765"},"institutions":[{"id":"https://openalex.org/I4210161429","display_name":"Intellectual Ventures (United States)","ror":"https://ror.org/05evsnd79","country_code":"US","type":"company","lineage":["https://openalex.org/I4210161429"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip A Eckhoff","raw_affiliation_strings":["Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA"],"affiliations":[{"raw_affiliation_string":"Epidemiological Modeling Group, Intellectual Ventures Laboratory, Washington, USA","institution_ids":["https://openalex.org/I4210161429"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5058436429"],"corresponding_institution_ids":["https://openalex.org/I4210161429"],"apc_list":null,"apc_paid":null,"fwci":0.6633,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.68711349,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"11","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10082","display_name":"HIV/AIDS Research and Interventions","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.6502397656440735},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5873468518257141},{"id":"https://openalex.org/keywords/setpoint","display_name":"Setpoint","score":0.5531729459762573},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5165151953697205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.468422532081604},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4653893709182739},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4119342267513275},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3929254114627838},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29222357273101807},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1925845742225647},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.17235484719276428}],"concepts":[{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.6502397656440735},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5873468518257141},{"id":"https://openalex.org/C12302492","wikidata":"https://www.wikidata.org/wiki/Q1752097","display_name":"Setpoint","level":2,"score":0.5531729459762573},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5165151953697205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.468422532081604},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4653893709182739},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4119342267513275},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3929254114627838},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29222357273101807},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1925845742225647},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17235484719276428},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000068698","descriptor_name":"Tenofovir","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068698","descriptor_name":"Tenofovir","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068698","descriptor_name":"Tenofovir","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000225","descriptor_name":"Adenine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000225","descriptor_name":"Adenine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000225","descriptor_name":"Adenine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D019380","descriptor_name":"Anti-HIV Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019562","descriptor_name":"Viral Load","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D055118","descriptor_name":"Medication Adherence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055118","descriptor_name":"Medication Adherence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055118","descriptor_name":"Medication Adherence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063065","descriptor_name":"Organophosphonates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063065","descriptor_name":"Organophosphonates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063065","descriptor_name":"Organophosphonates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-7-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-11","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-11","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:23379669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23379669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2647282","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3643872","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-11","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-11","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8600000143051147}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126695841.pdf","grobid_xml":"https://content.openalex.org/works/W2126695841.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W971062622","https://openalex.org/W1522687244","https://openalex.org/W1915983969","https://openalex.org/W1966584444","https://openalex.org/W1978430573","https://openalex.org/W1980587508","https://openalex.org/W1982112616","https://openalex.org/W1982721121","https://openalex.org/W1983444422","https://openalex.org/W1992756712","https://openalex.org/W1992872742","https://openalex.org/W1999587405","https://openalex.org/W2002570479","https://openalex.org/W2006570999","https://openalex.org/W2011380918","https://openalex.org/W2011541285","https://openalex.org/W2012139740","https://openalex.org/W2012433410","https://openalex.org/W2018836188","https://openalex.org/W2023257490","https://openalex.org/W2029997107","https://openalex.org/W2030844138","https://openalex.org/W2036191183","https://openalex.org/W2036530138","https://openalex.org/W2038369742","https://openalex.org/W2042593276","https://openalex.org/W2042823706","https://openalex.org/W2045446531","https://openalex.org/W2046677139","https://openalex.org/W2055372786","https://openalex.org/W2061657962","https://openalex.org/W2063142364","https://openalex.org/W2064059889","https://openalex.org/W2065719742","https://openalex.org/W2070649137","https://openalex.org/W2083278156","https://openalex.org/W2089151634","https://openalex.org/W2096981707","https://openalex.org/W2099533369","https://openalex.org/W2101208237","https://openalex.org/W2109130469","https://openalex.org/W2109763529","https://openalex.org/W2112391961","https://openalex.org/W2117057469","https://openalex.org/W2117753925","https://openalex.org/W2121731508","https://openalex.org/W2123584222","https://openalex.org/W2124364050","https://openalex.org/W2124969212","https://openalex.org/W2129114331","https://openalex.org/W2129186628","https://openalex.org/W2134561708","https://openalex.org/W2135466424","https://openalex.org/W2145478121","https://openalex.org/W2146634980","https://openalex.org/W2150733448","https://openalex.org/W2151219710","https://openalex.org/W2153623795","https://openalex.org/W2155418451","https://openalex.org/W2158882181","https://openalex.org/W2159263888","https://openalex.org/W2162226934","https://openalex.org/W2163005803","https://openalex.org/W2164462848","https://openalex.org/W2164903312","https://openalex.org/W2166568961","https://openalex.org/W2167154952","https://openalex.org/W2168251450","https://openalex.org/W2168776079","https://openalex.org/W2171689424","https://openalex.org/W2177768857","https://openalex.org/W2496790545","https://openalex.org/W2584544035","https://openalex.org/W3103108126","https://openalex.org/W3121128764"],"related_works":["https://openalex.org/W2016551366","https://openalex.org/W2188759708","https://openalex.org/W2138564085","https://openalex.org/W2123163123","https://openalex.org/W292004825","https://openalex.org/W4386371748","https://openalex.org/W2147145791","https://openalex.org/W2111970140","https://openalex.org/W2964191569","https://openalex.org/W2086452998"],"abstract_inverted_index":{"We":[0],"have":[1],"shown":[2],"how":[3],"a":[4,16,105,121],"diverse":[5],"range":[6],"of":[7,19,32,49,60,67,73,90,97,111,128],"observable":[8],"viral":[9],"load":[10],"trajectories":[11],"can":[12],"be":[13],"produced":[14],"from":[15],"basic":[17],"model":[18,102],"virus":[20,51],"dynamics":[21,31],"using":[22],"immunity-related":[23],"\"levers\".":[24],"Immune":[25],"pressure,":[26],"in":[27],"turn,":[28],"influences":[29],"the":[30,64,71,88,95],"drug":[33,40,53,61,68,99,112,129],"resistance,":[34],"with":[35],"increased":[36],"immune":[37,56],"activity":[38],"delaying":[39],"resistance":[41,113],"and":[42,58,114],"driving":[43],"more":[44],"rapid":[45,79],"return":[46],"to":[47],"dominance":[48],"drug-susceptible":[50],"after":[52],"cessation.":[54],"Both":[55],"pressure":[57],"patterns":[59],"adherence":[62,82],"influence":[63],"long-term":[65],"risk":[66,96],"resistance.":[69,100,130],"In":[70],"case":[72],"accidental":[74],"PrEP":[75,92],"use":[76],"during":[77],"infection,":[78],"transitions":[80],"between":[81],"states":[83],"and/or":[84],"weak":[85],"immunity":[86],"fortifies":[87],"\"memory\"":[89],"previous":[91],"exposure,":[93],"increasing":[94],"future":[98],"This":[101],"framework":[103],"provides":[104],"means":[106],"for":[107,124],"analyzing":[108],"individual-level":[109],"risks":[110],"implementing":[115],"heterogeneities":[116],"among":[117],"hosts,":[118],"thereby":[119],"achieving":[120],"crucial":[122],"prerequisite":[123],"improving":[125],"population-level":[126],"models":[127]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
