{"id":"https://openalex.org/W2102230160","doi":"https://doi.org/10.1186/1752-0509-7-102","title":"Antibacterial mechanisms identified through structural systems pharmacology","display_name":"Antibacterial mechanisms identified through structural systems pharmacology","publication_year":2013,"publication_date":"2013-10-10","ids":{"openalex":"https://openalex.org/W2102230160","doi":"https://doi.org/10.1186/1752-0509-7-102","mag":"2102230160","pmid":"https://pubmed.ncbi.nlm.nih.gov/24112686"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-102","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-102","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-102","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060256253","display_name":"Roger L. Chang","orcid":"https://orcid.org/0000-0003-1630-6584"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger L Chang","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, La Jolla, CA 92093-0412, USA. palsson@ucsd.edu","Department of Systems Biology, Harvard Medical School, Boston, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, CA 92093-0412, USA. palsson@ucsd.edu","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Systems Biology, Harvard Medical School, Boston, USA#TAB#","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066245750","display_name":"Lei Xie","orcid":"https://orcid.org/0000-0001-9051-2111"},"institutions":[{"id":"https://openalex.org/I121847817","display_name":"The Graduate Center, CUNY","ror":"https://ror.org/00awd9g61","country_code":"US","type":"education","lineage":["https://openalex.org/I121847817"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Xie","raw_affiliation_strings":["Department of Computer Science, Hunter College, New York, NY, 10065, USA","The Graduate Center, The City University of New York, New York, NY, 10065, USA","Department of Computer Science, Hunter College, New York, USA","The Graduate Center, The City University of New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hunter College, New York, NY, 10065, USA","institution_ids":["https://openalex.org/I39694355"]},{"raw_affiliation_string":"The Graduate Center, The City University of New York, New York, NY, 10065, USA","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I121847817"]},{"raw_affiliation_string":"Department of Computer Science, Hunter College, New York, USA","institution_ids":["https://openalex.org/I39694355"]},{"raw_affiliation_string":"The Graduate Center, The City University of New York, New York, USA","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I121847817"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075833022","display_name":"Philip E. Bourne","orcid":"https://orcid.org/0000-0002-7618-7292"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip E Bourne","raw_affiliation_strings":["San Diego Supercomputer Center, University of California San Diego, La Jolla, CA, USA","Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA","San Diego Supercomputer Center, University of California San Diego, La Jolla, USA","Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051097609","display_name":"Bernhard \u00d8. Palsson","orcid":"https://orcid.org/0000-0003-2357-6785"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernhard O Palsson","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093-0412, USA","Department of Bioengineering, University of California, San Diego La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093-0412, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego La Jolla, USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.2442,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.88151008,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"102","last_page":"102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.3472999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.3472999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.22579999268054962,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.06560000032186508,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5657299160957336},{"id":"https://openalex.org/keywords/antibacterial-activity","display_name":"Antibacterial activity","score":0.5614996552467346},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.4987149238586426},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.47928375005722046},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.46308475732803345},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4532212018966675},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4423861801624298},{"id":"https://openalex.org/keywords/protein-subunit","display_name":"Protein subunit","score":0.41459837555885315},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40151247382164},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.35606610774993896},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21344825625419617},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.20336508750915527},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18153539299964905}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5657299160957336},{"id":"https://openalex.org/C2780104969","wikidata":"https://www.wikidata.org/wiki/Q4774530","display_name":"Antibacterial activity","level":3,"score":0.5614996552467346},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.4987149238586426},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.47928375005722046},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.46308475732803345},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4532212018966675},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4423861801624298},{"id":"https://openalex.org/C104292427","wikidata":"https://www.wikidata.org/wiki/Q899781","display_name":"Protein subunit","level":3,"score":0.41459837555885315},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40151247382164},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.35606610774993896},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21344825625419617},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.20336508750915527},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18153539299964905}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1752-0509-7-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-102","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-102","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24112686","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24112686","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:academicworks.cuny.edu:hc_pubs-1175","is_oa":false,"landing_page_url":"https://academicworks.cuny.edu/hc_pubs/155","pdf_url":null,"source":{"id":"https://openalex.org/S4377196304","display_name":"CUNY Academic Works (City University of New York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174216632","host_organization_name":"City University of New York","host_organization_lineage":["https://openalex.org/I174216632"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications and Research","raw_type":"article"},{"id":"pmh:oai:dash.harvard.edu:1/11879325","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:11879325","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt0961946g","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/0961946g","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, vol 7, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2840192","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3853765","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3853765","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3853765","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:qt0961946g","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/0961946g","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chang, Roger L; Xie, Lei; Bourne, Philip E; &amp; Palsson, Bernhard O. (2013). Antibacterial mechanisms identified through structural systems pharmacology. BMC Systems Biology, 7(1), 102. doi: http://dx.doi.org/10.1186/1752-0509-7-102. Retrieved from: http://www.escholarship.org/uc/item/0961946g","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-102","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-102","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1406212572","display_name":"II-EN: CUNY Computing Research Infrastructure","funder_award_id":"0958379","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1863591755","display_name":null,"funder_award_id":"CNS-0855217","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2573477212","display_name":null,"funder_award_id":"GM068837","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2675982406","display_name":null,"funder_award_id":"R01 GM057089","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2970038619","display_name":null,"funder_award_id":"CNS-0958379","funder_id":"https://openalex.org/F4320309102","funder_display_name":"City University of New York"},{"id":"https://openalex.org/G7575059219","display_name":null,"funder_award_id":"CNS-0958379","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7836306409","display_name":null,"funder_award_id":"CNS-0855217","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8023629760","display_name":null,"funder_award_id":"CNS-0958379","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8055720154","display_name":null,"funder_award_id":"GM057089","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8724749099","display_name":"II-EN: City University of New York - Computing Research Infrastructure","funder_award_id":"0855217","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8757820870","display_name":null,"funder_award_id":"CNS-0855217","funder_id":"https://openalex.org/F4320309102","funder_display_name":"City University of New York"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309102","display_name":"City University of New York","ror":"https://ror.org/00453a208"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102230160.pdf","grobid_xml":"https://content.openalex.org/works/W2102230160.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W1989061197","https://openalex.org/W1991004166","https://openalex.org/W2001977454","https://openalex.org/W2009682500","https://openalex.org/W2015147525","https://openalex.org/W2019974881","https://openalex.org/W2022659284","https://openalex.org/W2035503835","https://openalex.org/W2039473152","https://openalex.org/W2040798763","https://openalex.org/W2047250503","https://openalex.org/W2066918275","https://openalex.org/W2074192927","https://openalex.org/W2074546926","https://openalex.org/W2076764146","https://openalex.org/W2078355959","https://openalex.org/W2096541451","https://openalex.org/W2098178401","https://openalex.org/W2101078720","https://openalex.org/W2114687365","https://openalex.org/W2124737787","https://openalex.org/W2127872845","https://openalex.org/W2130479394","https://openalex.org/W2135732933","https://openalex.org/W2136750916","https://openalex.org/W2137052779","https://openalex.org/W2139915240","https://openalex.org/W2147472054","https://openalex.org/W2157760740","https://openalex.org/W2159482845","https://openalex.org/W2162128823","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2152933096","https://openalex.org/W2898595765","https://openalex.org/W2072067873","https://openalex.org/W2153121902","https://openalex.org/W2074192927","https://openalex.org/W1980639701","https://openalex.org/W2013003323","https://openalex.org/W2096630686","https://openalex.org/W2108103746","https://openalex.org/W2098392534"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,92,122,222,245],"growing":[2],"discipline":[3],"of":[4,18,35,53,88,98,106,125,150,197,207,239,242,251,283],"structural":[5,33,80,223],"systems":[6,81,224],"pharmacology":[7,82,225],"is":[8,285],"applied":[9],"prospectively":[10],"in":[11,21,84,214,228,236],"this":[12,79,191,229],"study":[13,230,246],"to":[14,74,141,187,202,233,257,272,287],"predict":[15],"pharmacological":[16],"outcomes":[17],"antibacterial":[19,89,96,123,145,158,243,258,289],"compounds":[20,99,155],"Escherichia":[22],"coli":[23,217,294],"K12.":[24],"This":[25,275],"work":[26],"builds":[27],"upon":[28,46],"previously":[29,48,199],"established":[30],"methods":[31],"for":[32,60,65,78,95,102,154,171,204,253,291],"prediction":[34,93,238],"ligand":[36],"binding":[37,112],"pockets":[38],"on":[39],"protein":[40,57,66,111,175,208],"molecules":[41],"and":[42,44,86,114,128,133,163,260,264,277,295],"utilizes":[43],"expands":[45],"the":[47,76,188,198,215,237,280],"developed":[49,200],"genome":[50],"scale":[51],"model":[52],"metabolism":[54],"integrated":[55],"with":[56,156,211],"structures":[58,210],"(GEM-PRO)":[59],"E.":[61,216,293],"coli,":[62],"structurally":[63],"accounting":[64],"complexes.":[67],"Carefully":[68],"selected":[69],"case":[70],"studies":[71],"are":[72,270],"demonstrated":[73],"display":[75],"potential":[77],"framework":[83,94,226],"discovery":[85],"development":[87,259],"compounds.":[90,244],"RESULTS:":[91],"activity":[97,124],"was":[100,139,231],"validated":[101],"a":[103,135,172,248],"control":[104,137],"set":[105],"well-studied":[107],"compounds,":[108],"recapitulating":[109],"experimentally-determined":[110],"interactions":[113],"deleterious":[115],"growth":[116],"phenotypes":[117],"resulting":[118],"from":[119],"these":[120],"interactions.":[121],"fosfomycin,":[126],"sulfathiazole,":[127],"trimethoprim":[129],"were":[130,152,169],"accurately":[131],"predicted,":[132],"as":[134],"negative":[136],"glucose":[138],"found":[140],"have":[142],"no":[143],"predicted":[144,153,170],"activity.":[146],"Previously":[147],"uncharacterized":[148],"mechanisms":[149,241],"action":[151],"known":[157,178],"properties,":[159],"including":[160],"(1-hydroxyheptane-1,1-diyl)bis(phosphonic":[161],"acid)":[162],"cholesteryl":[164],"oleate.":[165],"Five":[166],"candidate":[167],"inhibitors":[168],"desirable":[173],"target":[174],"without":[176],"any":[177],"inhibitors,":[179],"tryptophan":[180],"synthase":[181],"\u03b2":[182],"subunit":[183],"(TrpB).":[184],"In":[185],"addition":[186],"predictions":[189,282],"presented,":[190],"effort":[192],"also":[193,279],"included":[194,213],"significant":[195],"expansion":[196],"GEM-PRO":[201],"account":[203],"physiological":[205],"assemblies":[206],"complex":[209],"activities":[212],"K12":[218],"metabolic":[219],"network.":[220],"CONCLUSIONS:":[221],"presented":[227],"shown":[232],"be":[234],"effective":[235],"molecular":[240,263],"provides":[247],"promising":[249],"proof":[250],"principle":[252],"such":[254],"an":[255],"approach":[256],"raises":[261],"specific":[262,281],"systemic":[265],"hypotheses":[266],"about":[267],"antibacterials":[268],"that":[269],"amenable":[271],"experimental":[273],"testing.":[274],"framework,":[276],"perhaps":[278],"antibacterials,":[284],"extensible":[286],"developing":[288],"treatments":[290],"pathogenic":[292],"other":[296],"bacterial":[297],"pathogens.":[298]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
