{"id":"https://openalex.org/W2103033592","doi":"https://doi.org/10.1186/1752-0509-7-100","title":"NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps","display_name":"NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps","publication_year":2013,"publication_date":"2013-10-07","ids":{"openalex":"https://openalex.org/W2103033592","doi":"https://doi.org/10.1186/1752-0509-7-100","mag":"2103033592","pmid":"https://pubmed.ncbi.nlm.nih.gov/24099179"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-7-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-100","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-100","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-100","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029262309","display_name":"Inna Kuperstein","orcid":"https://orcid.org/0000-0001-8086-8915"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Inna Kuperstein","raw_affiliation_strings":["Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 5, France. Andrei.Zinovyev@curie.fr","Mines ParisTech, Fontainebleau, France","INSERM, Paris, France","Institut Curie, Paris cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 5, France. Andrei.Zinovyev@curie.fr","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines ParisTech, Fontainebleau, France","institution_ids":["https://openalex.org/I70768539"]},{"raw_affiliation_string":"INSERM, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091794519","display_name":"David Cohen","orcid":"https://orcid.org/0000-0003-4321-4554"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David PA Cohen","raw_affiliation_strings":["INSERM, U900, Paris, France","Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","Mines ParisTech, Fontainebleau, France","INSERM, Paris, France","Institut Curie, Paris cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, U900, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines ParisTech, Fontainebleau, France","institution_ids":["https://openalex.org/I70768539"]},{"raw_affiliation_string":"INSERM, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026975497","display_name":"Stuart Pook","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stuart Pook","raw_affiliation_strings":["Sysra, Yerres, France","Yerres, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sysra, Yerres, France","institution_ids":[]},{"raw_affiliation_string":"Yerres, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091579624","display_name":"Eric Viara","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Viara","raw_affiliation_strings":["Sysra, Yerres, France","Yerres, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sysra, Yerres, France","institution_ids":[]},{"raw_affiliation_string":"Yerres, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061154457","display_name":"Laurence Calzone","orcid":"https://orcid.org/0000-0002-7835-1148"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurence Calzone","raw_affiliation_strings":["INSERM, U900, Paris, France","Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","Mines ParisTech, Fontainebleau, France","Institut Curie, Paris cedex 5, France","INSERM, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, U900, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines ParisTech, Fontainebleau, France","institution_ids":["https://openalex.org/I70768539"]},{"raw_affiliation_string":"Institut Curie, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"INSERM, Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062067186","display_name":"Emmanuel Barillot","orcid":"https://orcid.org/0000-0003-2724-2002"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuel Barillot","raw_affiliation_strings":["INSERM, U900, Paris, France","Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","Mines ParisTech, Fontainebleau, France","Institut Curie, Paris cedex 5, France","INSERM, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, U900, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines ParisTech, Fontainebleau, France","institution_ids":["https://openalex.org/I70768539"]},{"raw_affiliation_string":"Institut Curie, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"INSERM, Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077253721","display_name":"Andre\u00ef Zinovyev","orcid":"https://orcid.org/0000-0002-9517-7284"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Andrei Zinovyev","raw_affiliation_strings":["INSERM, U900, Paris, France","Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","Mines ParisTech, Fontainebleau, France","INSERM, Paris, France","Institut Curie, Paris cedex 5, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM, U900, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, 26 rue d\u2019Ulm, 75248, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines ParisTech, Fontainebleau, France","institution_ids":["https://openalex.org/I70768539"]},{"raw_affiliation_string":"INSERM, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, Paris cedex 5, France","institution_ids":["https://openalex.org/I80043"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5077253721"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043"],"apc_list":null,"apc_paid":null,"fwci":3.5907,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.93585318,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"100","last_page":"100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.36250001192092896,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.36250001192092896,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.2992999851703644,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.23170000314712524,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7284272909164429},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.5537673234939575},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5452057719230652},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4897797107696533},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4761664569377899},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.42471209168434143},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4169306457042694},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.24037086963653564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16329485177993774}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7284272909164429},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.5537673234939575},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5452057719230652},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4897797107696533},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4761664569377899},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.42471209168434143},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4169306457042694},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.24037086963653564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16329485177993774},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057218","descriptor_name":"Blogging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057218","descriptor_name":"Blogging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057218","descriptor_name":"Blogging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-7-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-100","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-100","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24099179","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24099179","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:HAL:inserm-00872428v1","is_oa":false,"landing_page_url":"https://inserm.hal.science/inserm-00872428","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 2013, 7 (1), pp.100. &#x27E8;10.1186/1752-0509-7-100&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2838306","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3851986","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3851986","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3851986","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-7-100","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-7-100","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-7-100","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322363","display_name":"Ligue Contre le Cancer","ror":"https://ror.org/00rkrv905"},{"id":"https://openalex.org/F4320323807","display_name":"Institut National Du Cancer","ror":"https://ror.org/03m8vkq32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103033592.pdf","grobid_xml":"https://content.openalex.org/works/W2103033592.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W571710515","https://openalex.org/W1965264154","https://openalex.org/W1969709265","https://openalex.org/W1970594207","https://openalex.org/W1974436271","https://openalex.org/W2000860171","https://openalex.org/W2009563611","https://openalex.org/W2010502047","https://openalex.org/W2021239799","https://openalex.org/W2023208820","https://openalex.org/W2029263520","https://openalex.org/W2045478141","https://openalex.org/W2056365020","https://openalex.org/W2069157810","https://openalex.org/W2070884496","https://openalex.org/W2080056257","https://openalex.org/W2099396594","https://openalex.org/W2102899487","https://openalex.org/W2112651905","https://openalex.org/W2119876770","https://openalex.org/W2128601422","https://openalex.org/W2128763542","https://openalex.org/W2135857985","https://openalex.org/W2142237411","https://openalex.org/W2142302575","https://openalex.org/W2146026780","https://openalex.org/W2146111380","https://openalex.org/W2147714160","https://openalex.org/W2150908245","https://openalex.org/W2156907249","https://openalex.org/W2159675211","https://openalex.org/W2163500926","https://openalex.org/W2163993275","https://openalex.org/W2172102555","https://openalex.org/W2396491656","https://openalex.org/W2400198681","https://openalex.org/W4233060585"],"related_works":["https://openalex.org/W2788595494","https://openalex.org/W2244676099","https://openalex.org/W3172556642","https://openalex.org/W3157456843","https://openalex.org/W2036676347","https://openalex.org/W1589307369","https://openalex.org/W2111943219","https://openalex.org/W3165790285","https://openalex.org/W3144351989","https://openalex.org/W2007163885"],"abstract_inverted_index":{"BACKGROUND:":[0],"Molecular":[1],"biology":[2,154],"knowledge":[3],"can":[4,143],"be":[5,144],"formalized":[6],"and":[7,33,54,71,98,133,167,188,207,218,242],"systematically":[8],"represented":[9,184],"in":[10,68,91,149,161,215,266],"a":[11,15,80,104,172,189,198,278],"computer-readable":[12],"form":[13],"as":[14],"comprehensive":[16,210],"map":[17,112,132,187,195],"of":[18,26,28,36,51,75,87,106,125,128,130,152,159,164,180,193,212,232,235,271,283],"molecular":[19,29,88,153,157,182,213,236,264],"interactions.":[20],"There":[21],"exist":[22],"an":[23,216,223],"increasing":[24],"number":[25],"maps":[27,86,211,234,260,265],"interactions":[30,214],"containing":[31],"detailed":[32,181],"step-wise":[34],"description":[35],"various":[37],"cell":[38],"mechanisms.":[39],"It":[40,100],"is":[41,73,79,101,255,261],"difficult":[42],"to":[43,48,55,63,197,222,239],"explore":[44],"these":[45,65],"large":[46,85],"maps,":[47],"organize":[49],"discussion":[50],"their":[52,94],"content":[53],"maintain":[56],"them.":[57,76],"Several":[58],"efforts":[59],"were":[60],"recently":[61],"made":[62],"combine":[64],"capabilities":[66],"together":[67],"one":[69,74],"environment,":[70],"NaviCell":[72,78,142,176,202,228,276],"RESULTS:":[77],"web-based":[81,136],"environment":[82],"for":[83,121,138,155,257,263,280],"exploiting":[84],"interactions,":[89,237],"created":[90],"CellDesigner,":[92],"allowing":[93],"easy":[95],"exploration,":[96],"curation":[97,282],"maintenance.":[99],"characterized":[102],"by":[103,147],"combination":[105],"three":[107],"essential":[108],"features:":[109],"(1)":[110],"efficient":[111],"browsing":[113],"based":[114],"on":[115,185],"Google":[116,240],"Maps;":[117],"(2)":[118],"semantic":[119],"zooming":[120,253],"viewing":[122],"different":[123],"levels":[124],"details":[126],"or":[127],"abstraction":[129],"the":[131,150,162,186,194,209],"(3)":[134],"integrated":[135],"blog":[137],"collecting":[139],"community":[140],"feedback.":[141],"easily":[145],"used":[146,256],"experts":[148],"field":[151],"studying":[156],"entities":[158],"interest":[160],"context":[163],"signaling":[165,174],"pathways":[166,170],"crosstalk":[168],"between":[169],"within":[171],"global":[173],"network.":[175],"allows":[177],"both":[178],"exploration":[179,231],"mechanisms":[183],"more":[190],"abstract":[191],"view":[192],"up":[196],"top-level":[199],"modular":[200],"representation.":[201],"greatly":[203],"facilitates":[204],"curation,":[205],"maintenance":[206],"updating":[208],"interactive":[217],"user-friendly":[219,230],"fashion":[220],"due":[221],"imbedded":[224],"blogging":[225],"system.":[226],"CONCLUSIONS:":[227],"provides":[229,277],"large-scale":[233],"thanks":[238],"Maps":[241],"WordPress":[243],"interfaces,":[244],"with":[245],"which":[246,254],"many":[247],"users":[248],"are":[249],"already":[250],"familiar.":[251],"Semantic":[252],"navigating":[258],"geographical":[259],"adopted":[262],"NaviCell,":[267],"making":[268],"any":[269],"level":[270],"visualization":[272],"readable.":[273],"In":[274],"addition,":[275],"framework":[279],"community-based":[281],"maps.":[284]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
