{"id":"https://openalex.org/W1979787145","doi":"https://doi.org/10.1186/1752-0509-6-s3-s5","title":"Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum","display_name":"Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W1979787145","doi":"https://doi.org/10.1186/1752-0509-6-s3-s5","mag":"1979787145","pmid":"https://pubmed.ncbi.nlm.nih.gov/23282319"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-6-s3-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s3-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S3-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S3-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105653813","display_name":"Hong Cai","orcid":"https://orcid.org/0000-0001-8994-9324"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong Cai","raw_affiliation_strings":["Department of Biology, University of Texas at San Antonio, San Antonio, TX 78249, USA","Department of Biology, University of Texas at San Antonio, San Antonio, TX, 78249, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Biology, University of Texas at San Antonio, San Antonio, TX, 78249, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048089609","display_name":"Changjin Hong","orcid":"https://orcid.org/0000-0002-9671-2226"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Changjin Hong","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090573566","display_name":"Jianying Gu","orcid":"https://orcid.org/0000-0003-4972-8054"},"institutions":[{"id":"https://openalex.org/I142393192","display_name":"College of Staten Island","ror":"https://ror.org/02p179j44","country_code":"US","type":"education","lineage":["https://openalex.org/I142393192"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianying Gu","raw_affiliation_strings":["Department of Biology, College of Staten Island, City University of New York, Staten Island, NY, 10314, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, College of Staten Island, City University of New York, Staten Island, NY, 10314, USA","institution_ids":["https://openalex.org/I142393192","https://openalex.org/I174216632"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110291878","display_name":"Timothy Lilburn","orcid":null},"institutions":[{"id":"https://openalex.org/I118047749","display_name":"American Type Culture Collection","ror":"https://ror.org/03thhhv76","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I118047749"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy G Lilburn","raw_affiliation_strings":["Department of Bacteriology, American Type Culture Collection, Manassas, VA, 20110, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, American Type Culture Collection, Manassas, VA, 20110, USA","institution_ids":["https://openalex.org/I118047749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066338313","display_name":"Rui Kuang","orcid":"https://orcid.org/0000-0002-4916-903X"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Kuang","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100610080","display_name":"Yufeng Wang","orcid":"https://orcid.org/0000-0002-9959-4149"},"institutions":[{"id":"https://openalex.org/I4210154757","display_name":"Texas Center for Infectious Disease","ror":"https://ror.org/04rtgz764","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210154757"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yufeng Wang","raw_affiliation_strings":["Department of Biology, University of Texas at San Antonio, San Antonio, TX, 78249, USA","South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, 78249, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Texas at San Antonio, San Antonio, TX, 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX, 78249, USA","institution_ids":["https://openalex.org/I4210154757"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100610080"],"corresponding_institution_ids":["https://openalex.org/I4210154757","https://openalex.org/I45438204"],"apc_list":null,"apc_paid":null,"fwci":1.3437,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.79047731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"6","issue":"S3","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":0.186599999666214,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.09200000017881393,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmodium-falciparum","display_name":"Plasmodium falciparum","score":0.8790752291679382},{"id":"https://openalex.org/keywords/malaria","display_name":"Malaria","score":0.7337467074394226},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.6891331672668457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6483948230743408},{"id":"https://openalex.org/keywords/parasite-hosting","display_name":"Parasite hosting","score":0.623585045337677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6181748509407043},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5704771280288696},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20891007781028748},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10775592923164368}],"concepts":[{"id":"https://openalex.org/C2778371730","wikidata":"https://www.wikidata.org/wiki/Q311383","display_name":"Plasmodium falciparum","level":3,"score":0.8790752291679382},{"id":"https://openalex.org/C2778048844","wikidata":"https://www.wikidata.org/wiki/Q12156","display_name":"Malaria","level":2,"score":0.7337467074394226},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.6891331672668457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6483948230743408},{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.623585045337677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6181748509407043},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5704771280288696},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20891007781028748},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10775592923164368},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015800","descriptor_name":"Protozoan Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018503","descriptor_name":"Genome, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042002","descriptor_name":"Chromatin Assembly and Disassembly","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042002","descriptor_name":"Chromatin Assembly and Disassembly","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042002","descriptor_name":"Chromatin Assembly and Disassembly","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-6-s3-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s3-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S3-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:23282319","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23282319","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:academicworks.cuny.edu:si_pubs-1030","is_oa":false,"landing_page_url":"https://academicworks.cuny.edu/si_pubs/24","pdf_url":null,"source":{"id":"https://openalex.org/S4377196304","display_name":"CUNY Academic Works (City University of New York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174216632","host_organization_name":"City University of New York","host_organization_lineage":["https://openalex.org/I174216632"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications and Research","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3524314","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3524314","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-6-s3-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s3-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S3-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G1919722951","display_name":null,"funder_award_id":"G12MD007591","funder_id":"https://openalex.org/F4320337534","funder_display_name":"National Institute on Minority Health and Health Disparities"},{"id":"https://openalex.org/G5702064327","display_name":null,"funder_award_id":"G12MD007591","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G6035731016","display_name":null,"funder_award_id":"G12MD007591","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6773850818","display_name":null,"funder_award_id":"RR013646","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7455529658","display_name":null,"funder_award_id":"GM100806","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G882557516","display_name":null,"funder_award_id":"AI080579","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309636","display_name":"University of Minnesota","ror":"https://ror.org/03grvy078"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337534","display_name":"National Institute on Minority Health and Health Disparities","ror":"https://ror.org/0493hgw16"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1979787145.pdf","grobid_xml":"https://content.openalex.org/works/W1979787145.grobid-xml"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W1542652324","https://openalex.org/W1554851690","https://openalex.org/W1599773371","https://openalex.org/W1816257748","https://openalex.org/W1827912384","https://openalex.org/W1835509607","https://openalex.org/W1872853499","https://openalex.org/W1965798843","https://openalex.org/W1966447624","https://openalex.org/W1967573783","https://openalex.org/W1971707621","https://openalex.org/W1974320305","https://openalex.org/W1978666849","https://openalex.org/W1978920477","https://openalex.org/W1979301047","https://openalex.org/W1981723999","https://openalex.org/W1982537876","https://openalex.org/W1983245188","https://openalex.org/W1984209790","https://openalex.org/W1986640433","https://openalex.org/W1995918845","https://openalex.org/W1998943407","https://openalex.org/W2004429425","https://openalex.org/W2008654296","https://openalex.org/W2018269643","https://openalex.org/W2019387703","https://openalex.org/W2019851585","https://openalex.org/W2026483075","https://openalex.org/W2027990366","https://openalex.org/W2028111526","https://openalex.org/W2028452247","https://openalex.org/W2031215274","https://openalex.org/W2033911267","https://openalex.org/W2037173275","https://openalex.org/W2038121339","https://openalex.org/W2041067868","https://openalex.org/W2041687629","https://openalex.org/W2044917853","https://openalex.org/W2052767941","https://openalex.org/W2053315960","https://openalex.org/W2057545775","https://openalex.org/W2062788646","https://openalex.org/W2062905495","https://openalex.org/W2064792211","https://openalex.org/W2068928962","https://openalex.org/W2068961074","https://openalex.org/W2069823850","https://openalex.org/W2070779598","https://openalex.org/W2071524757","https://openalex.org/W2077191721","https://openalex.org/W2077503748","https://openalex.org/W2081217073","https://openalex.org/W2083280521","https://openalex.org/W2084905877","https://openalex.org/W2090128221","https://openalex.org/W2091205384","https://openalex.org/W2092487651","https://openalex.org/W2094491295","https://openalex.org/W2096496718","https://openalex.org/W2097660548","https://openalex.org/W2098689079","https://openalex.org/W2102155970","https://openalex.org/W2104276561","https://openalex.org/W2105625635","https://openalex.org/W2107421681","https://openalex.org/W2107427454","https://openalex.org/W2110151491","https://openalex.org/W2110952939","https://openalex.org/W2112047656","https://openalex.org/W2116423958","https://openalex.org/W2117200623","https://openalex.org/W2118103211","https://openalex.org/W2121485644","https://openalex.org/W2122961704","https://openalex.org/W2125804133","https://openalex.org/W2127355422","https://openalex.org/W2127660113","https://openalex.org/W2128946569","https://openalex.org/W2129426632","https://openalex.org/W2129895984","https://openalex.org/W2132255041","https://openalex.org/W2132285289","https://openalex.org/W2132632499","https://openalex.org/W2133015446","https://openalex.org/W2133218642","https://openalex.org/W2136316164","https://openalex.org/W2141324876","https://openalex.org/W2142365031","https://openalex.org/W2143861412","https://openalex.org/W2144205077","https://openalex.org/W2144362290","https://openalex.org/W2144656637","https://openalex.org/W2148296398","https://openalex.org/W2148312898","https://openalex.org/W2148621849","https://openalex.org/W2149991876","https://openalex.org/W2151383900","https://openalex.org/W2151875636","https://openalex.org/W2152007783","https://openalex.org/W2153893707","https://openalex.org/W2155142785","https://openalex.org/W2155606054","https://openalex.org/W2156022009","https://openalex.org/W2156200168","https://openalex.org/W2156522652","https://openalex.org/W2158217645","https://openalex.org/W2159407301","https://openalex.org/W2160178796","https://openalex.org/W2160648174","https://openalex.org/W2160795241","https://openalex.org/W2162195177","https://openalex.org/W2163443861","https://openalex.org/W2163679740","https://openalex.org/W2164365774","https://openalex.org/W2167222948","https://openalex.org/W2168255548","https://openalex.org/W2168474259","https://openalex.org/W2171030481","https://openalex.org/W2171437346","https://openalex.org/W2318448254","https://openalex.org/W2396581225","https://openalex.org/W2586983636","https://openalex.org/W2911738047","https://openalex.org/W3126712840","https://openalex.org/W4206914775"],"related_works":["https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3087203342","https://openalex.org/W2377184161","https://openalex.org/W228984114","https://openalex.org/W4226360758","https://openalex.org/W2090026684","https://openalex.org/W3169338074","https://openalex.org/W2767183729"],"abstract_inverted_index":{"BACKGROUND:":[0],"Malaria":[1],"causes":[2],"over":[3],"one":[4],"million":[5],"deaths":[6],"annually,":[7],"posing":[8],"an":[9,68],"enormous":[10],"health":[11],"and":[12,38,61,119,152,175,206,214,230],"economic":[13],"burden":[14],"in":[15,31,82,109,114,135,147,160],"endemic":[16],"regions.":[17],"The":[18],"completion":[19],"of":[20,23,29,53,90,131,163,194,233],"genome":[21,169,228],"sequencing":[22],"the":[24,32,54,83,103,106,136,148,195],"causative":[25],"agents,":[26],"a":[27,161,185,231],"group":[28],"parasites":[30],"genus":[33],"Plasmodium,":[34],"revealed":[35],"potential":[36,154,203],"drug":[37],"vaccine":[39],"candidates.":[40],"However,":[41],"genomics-driven":[42],"target":[43],"discovery":[44],"has":[45],"been":[46],"significantly":[47],"hampered":[48],"by":[49],"our":[50,100],"limited":[51],"knowledge":[52,234],"cellular":[55,164,236],"networks":[56,113],"associated":[57],"with":[58,226],"parasite":[59,85,211],"development":[60],"pathogenesis.":[62],"In":[63,178],"this":[64,179],"paper,":[65],"we":[66,182],"propose":[67],"approach":[69,101,188,217],"based":[70],"on":[71,93],"aligning":[72],"neighborhood":[73,107],"PPI":[74],"subnetworks":[75,108],"across":[76],"species":[77],"to":[78,96,201,221],"identify":[79,202],"network":[80],"components":[81],"malaria":[84],"P.":[86,117,123],"falciparum.":[87],"RESULTS:":[88],"Instead":[89],"only":[91],"relying":[92],"sequence":[94],"similarities":[95],"detect":[97],"functional":[98,129],"orthologs,":[99],"measures":[102],"conservation":[104],"between":[105],"protein-protein":[110],"interaction":[111],"(PPI)":[112],"two":[115],"species,":[116],"falciparum":[118,124],"E.":[120,137],"coli.":[121],"1,082":[122],"proteins":[125],"were":[126],"predicted":[127],"as":[128],"orthologs":[130],"known":[132],"transcriptional":[133,142,145],"regulators":[134,146],"coli":[138],"network,":[139],"including":[140],"general":[141],"regulators,":[143],"parasite-specific":[144],"ApiAP2":[149],"protein":[150,173],"family,":[151],"other":[153,222],"regulatory":[155],"proteins.":[156],"They":[157],"are":[158],"implicated":[159],"variety":[162],"processes":[165],"involving":[166],"chromatin":[167],"remodeling,":[168],"integrity,":[170],"secretion,":[171],"invasion,":[172],"processing,":[174],"metabolism.":[176],"CONCLUSIONS:":[177],"proof-of-concept":[180],"study,":[181],"demonstrate":[183],"that":[184],"subnetwork":[186],"alignment":[187],"can":[189,218],"reveal":[190],"previously":[191],"uncharacterized":[192],"members":[193],"subnetworks,":[196],"which":[197],"opens":[198],"new":[199,208],"opportunities":[200],"therapeutic":[204],"targets":[205],"provide":[207],"insights":[209],"into":[210],"biology,":[212],"pathogenesis":[213],"virulence.":[215],"This":[216],"be":[219],"extended":[220],"systems,":[223],"especially":[224],"those":[225],"poor":[227],"annotation":[229],"paucity":[232],"about":[235],"networks.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
