{"id":"https://openalex.org/W2131114385","doi":"https://doi.org/10.1186/1752-0509-6-s2-s2","title":"IntPath--an integrated pathway gene relationship database for model organisms and important pathogens","display_name":"IntPath--an integrated pathway gene relationship database for model organisms and important pathogens","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W2131114385","doi":"https://doi.org/10.1186/1752-0509-6-s2-s2","mag":"2131114385","pmid":"https://pubmed.ncbi.nlm.nih.gov/23282057"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-6-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s2-s2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S2-S2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S2-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065829677","display_name":"Hufeng Zhou","orcid":"https://orcid.org/0000-0001-9382-5674"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hufeng Zhou","raw_affiliation_strings":["NUS Graduate School for Integrative Sciences & Engineering, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS Graduate School for Integrative Sciences & Engineering, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101639377","display_name":"Jingjing Jin","orcid":"https://orcid.org/0000-0002-9793-3362"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jingjing Jin","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082240165","display_name":"Haojun Zhang","orcid":"https://orcid.org/0000-0002-5993-5260"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Haojun Zhang","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042613921","display_name":"Bo Yi","orcid":"https://orcid.org/0000-0001-5997-852X"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Bo Yi","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103206624","display_name":"Micha\u0142 Wo\u017aniak","orcid":"https://orcid.org/0000-0001-7313-864X"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL","SG"],"is_corresponding":false,"raw_author_name":"Michal Wozniak","raw_affiliation_strings":["Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Poland","School of Computing, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5012381970"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.7061,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.91031811,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"6","issue":"S2","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9247000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9247000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.02759999968111515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.01269999984651804,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6344539523124695},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6245688199996948},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5333870053291321},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5155489444732666},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.44898584485054016},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38433992862701416},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36042332649230957},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3132753372192383}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6344539523124695},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6245688199996948},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5333870053291321},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5155489444732666},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.44898584485054016},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38433992862701416},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36042332649230957},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3132753372192383}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-6-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s2-s2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S2-S2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:23282057","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23282057","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2521546","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3521174","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/77873","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/77873","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-6-s2-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-s2-s2","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-6-S2-S2","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131114385.pdf","grobid_xml":"https://content.openalex.org/works/W2131114385.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1969709265","https://openalex.org/W1970594207","https://openalex.org/W1981215030","https://openalex.org/W2010502047","https://openalex.org/W2017138237","https://openalex.org/W2035680235","https://openalex.org/W2040022355","https://openalex.org/W2100155101","https://openalex.org/W2102899487","https://openalex.org/W2106323366","https://openalex.org/W2107580398","https://openalex.org/W2111619115","https://openalex.org/W2113024448","https://openalex.org/W2134394193","https://openalex.org/W2155331065","https://openalex.org/W2155592392","https://openalex.org/W2155967165","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2166438558","https://openalex.org/W2172196250","https://openalex.org/W2915482286","https://openalex.org/W4213060373"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W1967424056","https://openalex.org/W868043274","https://openalex.org/W5284979","https://openalex.org/W2053706318","https://openalex.org/W4245853730","https://openalex.org/W2005388108","https://openalex.org/W2169736187"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pathway":[1,19,144],"data":[2,48,65,81,100,123,268,287,332,343],"are":[3,22,228,246,257,368],"important":[4,152,428],"for":[5,25,49,124,148],"understanding":[6],"the":[7,53,130,134,174,212,251,270,379,400],"relationship":[8,72,122,146,277,294],"between":[9],"genes,":[10],"proteins":[11],"and":[12,29,35,42,79,96,151,162,182,195,199,206,264,276,284,289,292,302,305,316,324,348,384,407,420,427,439],"many":[13,328],"other":[14,418],"molecules":[15],"in":[16,31,133,166,186,234,250,274,279,311,327,336,371,377,399,410,430],"living":[17],"organisms.":[18],"gene":[20,121,145,207,216,220,232,242,271,291,293],"relationships":[21,198,217,233,308],"crucial":[23],"information":[24],"guidance,":[26],"prediction,":[27],"reference":[28],"assessment":[30],"biochemistry,":[32],"computational":[33],"biology,":[34],"medicine.":[36],"Many":[37],"well-established":[38],"databases--e.g.,":[39],"KEGG,":[40],"WikiPathways,":[41,107],"BioCyc--are":[43],"dedicated":[44],"to":[45,76,178,259,417],"collecting":[46],"pathway":[47,77,99,120,227,236,392],"public":[50,104,125,138],"access.":[51],"However,":[52],"effectiveness":[54],"of":[55,98,170,203,211,218,241,262,381,391,403,433],"these":[56,91],"databases":[57,105,299],"is":[58,140,440],"hindered":[59],"by":[60,222,238,354,361],"issues":[61,92,380],"such":[62],"as":[63],"incompatible":[64,285],"formats,":[66],"inconsistent":[67,70,74,290],"molecular":[68,71],"representations,":[69,73],"referrals":[75],"names,":[78],"incomprehensive":[80],"from":[82,101,266,296],"different":[83,297],"databases.":[84,214,393],"RESULTS:":[85],"In":[86],"this":[87,167,187,411],"paper,":[88],"we":[89,421],"overcome":[90,376],"through":[93,351,358],"extraction,":[94],"normalization":[95],"integration":[97],"several":[102],"major":[103],"(KEGG,":[106],"BioCyc,":[108],"etc).":[109],"We":[110,281,374,394],"build":[111],"a":[112],"database":[113,147],"that":[114,386],"not":[115],"only":[116],"hosts":[117],"our":[118],"integrated":[119,252],"access":[126],"but":[127],"also":[128,247,345,369],"maintains":[129,436],"necessary":[131],"updates":[132,438],"long":[135],"run.":[136],"This":[137],"repository":[139],"named":[141],"IntPath":[142,172,190,331,342,378,435],"(Integrated":[143],"model":[149,425],"organisms":[150,398,426],"pathogens).":[153],"Four":[154],"organisms--S.":[155],"cerevisiae,":[156],"M.":[157,163],"tuberculosis":[158],"H37Rv,":[159],"H.":[160],"Sapiens":[161],"musculus--are":[164],"included":[165,396],"version":[168],"(V2.0)":[169],"IntPath.":[171,372,404,434],"uses":[173],"\"full":[175],"unification\"":[176],"approach":[177],"ensure":[179],"no":[180,183],"deletion":[181],"introduced":[184],"noise":[185],"process.":[188],"Therefore,":[189],"contains":[191],"much":[192,200],"richer":[193,249],"pathway-gene":[194,196,304,306],"pair":[197,307],"larger":[201],"number":[202,240],"non-redundant":[204],"genes":[205],"pairs":[208,243],"than":[209],"any":[210],"single-source":[213],"The":[215,231],"each":[219,235],"(measured":[221,237],"average":[223,239],"node":[224],"degree)":[225],"per":[226,244],"significantly":[229],"richer.":[230],"pathway)":[245],"considerably":[248],"pathways.":[253],"Moderate":[254],"manual":[255],"curation":[256],"involved":[258],"get":[260],"rid":[261],"errors":[263,273,278],"noises":[265],"source":[267,298],"(e.g.,":[269],"ID":[272],"WikiPathways":[275],"KEGG).":[280],"turn":[282],"complicated":[283],"xml":[286],"formats":[288],"representations":[295],"into":[300],"normalized":[301],"unified":[303],"neatly":[309],"recorded":[310],"simple":[312],"tab-delimited":[313],"text":[314,337],"format":[315,338],"MySQL":[317,340],"tables,":[318],"which":[319],"facilitates":[320],"convenient":[321],"automatic":[322],"computation":[323],"large-scale":[325],"referencing":[326],"related":[329],"studies.":[330],"can":[333,344,413],"be":[334,346,414],"downloaded":[335],"or":[339,357],"dump.":[341],"retrieved":[347],"analyzed":[349],"conveniently":[350],"web":[352,359],"service":[353],"local":[355],"programs":[356,408],"interface":[360],"mouse":[362],"clicks.":[363],"Several":[364],"useful":[365],"analysis":[366],"tools":[367],"provided":[370],"CONCLUSIONS:":[373],"have":[375,395],"compatibility,":[382],"consistency,":[383],"comprehensiveness":[385],"often":[387],"hamper":[388],"effective":[389],"use":[390],"four":[397],"current":[401],"release":[402],"Our":[405],"methodology":[406],"described":[409],"work":[412],"easily":[415],"applied":[416],"organisms;":[419],"will":[422],"include":[423],"more":[424],"pathogens":[429],"future":[431],"releases":[432],"regular":[437],"freely":[441],"available":[442],"at":[443],"http://compbio.ddns.comp.nus.edu.sg:8080/IntPath.":[444]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":2}],"updated_date":"2026-08-23T07:36:19.812096","created_date":"2025-10-10T00:00:00"}
