{"id":"https://openalex.org/W2000982470","doi":"https://doi.org/10.1186/1752-0509-6-96","title":"The Cell Collective: Toward an open and collaborative approach to systems biology","display_name":"The Cell Collective: Toward an open and collaborative approach to systems biology","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2000982470","doi":"https://doi.org/10.1186/1752-0509-6-96","mag":"2000982470","pmid":"https://pubmed.ncbi.nlm.nih.gov/22871178"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-6-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-96","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073371703","display_name":"Tom\u00e1\u0161 Helikar","orcid":"https://orcid.org/0000-0003-3653-1906"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Helikar","raw_affiliation_strings":["Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA. thelikar@unomaha.edu","Department of Mathematics, University of Nebraska at Omaha , Omaha, NE , USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA. thelikar@unomaha.edu","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha , Omaha, NE , USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025351054","display_name":"Bryan Kowal","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Kowal","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015076106","display_name":"Sean McClenathan","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean McClenathan","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028926418","display_name":"Mitchell A. Bruckner","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchell Bruckner","raw_affiliation_strings":["Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086924981","display_name":"Thaine Rowley","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thaine Rowley","raw_affiliation_strings":["Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055798532","display_name":"Alex Madrahimov","orcid":"https://orcid.org/0000-0003-4724-6844"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Madrahimov","raw_affiliation_strings":["Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, USA#TAB#","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109994090","display_name":"Ben Wicks","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ben Wicks","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023223989","display_name":"Manish Shrestha","orcid":"https://orcid.org/0000-0002-3023-2991"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manish Shrestha","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016120716","display_name":"Kahani Limbu","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kahani Limbu","raw_affiliation_strings":["College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"College of Information Science and Technology, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112648342","display_name":"Jim Rogers","orcid":"https://orcid.org/0000-0001-9327-1245"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]},{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jim A Rogers","raw_affiliation_strings":["Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, USA","Department of Mathematics, University of Nebraska at Omaha, Omaha, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]},{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, USA","institution_ids":["https://openalex.org/I59130452"]},{"raw_affiliation_string":"Department of Mathematics, University of Nebraska at Omaha, Omaha, USA","institution_ids":["https://openalex.org/I122266389"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5073371703"],"corresponding_institution_ids":["https://openalex.org/I122266389"],"apc_list":null,"apc_paid":null,"fwci":3.7647,"has_fulltext":true,"cited_by_count":260,"citation_normalized_percentile":{"value":0.94000726,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"6","issue":"1","first_page":"96","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6991884112358093},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6431095600128174},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4993715286254883},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4955991506576538},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4949764609336853},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.47445568442344666},{"id":"https://openalex.org/keywords/cell-function","display_name":"Cell function","score":0.47379109263420105},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46269071102142334},{"id":"https://openalex.org/keywords/globe","display_name":"Globe","score":0.42398151755332947},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.37790247797966003},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.22118014097213745},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17301347851753235},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.145999938249588},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.11873090267181396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6991884112358093},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6431095600128174},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4993715286254883},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4955991506576538},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4949764609336853},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.47445568442344666},{"id":"https://openalex.org/C2994604686","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell function","level":3,"score":0.47379109263420105},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46269071102142334},{"id":"https://openalex.org/C2775899829","wikidata":"https://www.wikidata.org/wiki/Q3109007","display_name":"Globe","level":2,"score":0.42398151755332947},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.37790247797966003},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.22118014097213745},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17301347851753235},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.145999938249588},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.11873090267181396},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-6-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:22871178","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22871178","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:biochemfacpub-1345","is_oa":true,"landing_page_url":"https://digitalcommons.unl.edu/biochemfacpub/354","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Biochemistry: Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:2b5d610fd891473c963c9d045f72004a","is_oa":true,"landing_page_url":"https://doaj.org/article/2b5d610fd891473c963c9d045f72004a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 6, Iss 1, p 96 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2445517","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3443426","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-6-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.46000000834465027,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000982470.pdf","grobid_xml":"https://content.openalex.org/works/W2000982470.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1978435670","https://openalex.org/W1978486653","https://openalex.org/W1986397618","https://openalex.org/W1991980854","https://openalex.org/W1995388828","https://openalex.org/W1996776596","https://openalex.org/W2008620264","https://openalex.org/W2010502047","https://openalex.org/W2013803819","https://openalex.org/W2016954850","https://openalex.org/W2017540033","https://openalex.org/W2020644002","https://openalex.org/W2038809984","https://openalex.org/W2042459594","https://openalex.org/W2068209123","https://openalex.org/W2082621456","https://openalex.org/W2090020814","https://openalex.org/W2091789479","https://openalex.org/W2097144068","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2124204260","https://openalex.org/W2130253098","https://openalex.org/W2133938042","https://openalex.org/W2137134545","https://openalex.org/W2143784594","https://openalex.org/W2150908245","https://openalex.org/W2154139219","https://openalex.org/W2155142785","https://openalex.org/W2155254562","https://openalex.org/W2159482845","https://openalex.org/W2161636210","https://openalex.org/W2164298117","https://openalex.org/W2164961004","https://openalex.org/W2165641442","https://openalex.org/W2167334954","https://openalex.org/W2184417913"],"related_works":["https://openalex.org/W1539266347","https://openalex.org/W2267913355","https://openalex.org/W2788570199","https://openalex.org/W2000787479","https://openalex.org/W4248006302","https://openalex.org/W1488904332","https://openalex.org/W4256453413","https://openalex.org/W207829213","https://openalex.org/W2315680351","https://openalex.org/W2003713758"],"abstract_inverted_index":{"The":[0],"Cell":[1],"Collective":[2],"is":[3],"a":[4,40],"web-based":[5],"platform":[6],"that":[7],"enables":[8],"laboratory":[9],"scientists":[10],"from":[11],"across":[12],"the":[13],"globe":[14],"to":[15,39],"collaboratively":[16],"build":[17],"large-scale":[18,41],"models":[19],"of":[20,36,43],"various":[21],"biological":[22],"processes,":[23],"and":[24],"simulate/analyze":[25],"them":[26],"in":[27],"real":[28],"time.":[29],"In":[30],"this":[31],"manuscript,":[32],"we":[33],"show":[34],"examples":[35],"its":[37],"application":[38],"model":[42],"signal":[44],"transduction.":[45]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":32},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":35},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
