{"id":"https://openalex.org/W1976812345","doi":"https://doi.org/10.1186/1752-0509-6-8","title":"FAME, the Flux Analysis and Modeling Environment","display_name":"FAME, the Flux Analysis and Modeling Environment","publication_year":2012,"publication_date":"2012-01-30","ids":{"openalex":"https://openalex.org/W1976812345","doi":"https://doi.org/10.1186/1752-0509-6-8","mag":"1976812345","pmid":"https://pubmed.ncbi.nlm.nih.gov/22289213"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041236871","display_name":"Joost Boele","orcid":"https://orcid.org/0000-0002-7183-9650"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joost Boele","raw_affiliation_strings":["Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050779826","display_name":"Brett G. Olivier","orcid":"https://orcid.org/0000-0002-5293-5321"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Brett G Olivier","raw_affiliation_strings":["Life Sciences, Centrum voor Wiskunde en Informatica (CWI), Science Park 123, 1098XG, Amsterdam, The Netherlands","Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","Life Sciences, Centrum voor Wiskunde en Informatica (CWI), Amsterdam, The Netherlands","Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences, Centrum voor Wiskunde en Informatica (CWI), Science Park 123, 1098XG, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Life Sciences, Centrum voor Wiskunde en Informatica (CWI), Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070958079","display_name":"Bas Teusink","orcid":"https://orcid.org/0000-0003-3929-0423"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Bas Teusink","raw_affiliation_strings":["Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Netherlands Institute for Systems Biology (NISB), Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, De Boelelaan 1085, 1081HV, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Systems Bioinformatics/AIMMS, VU University Amsterdam, Amsterdam, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070958079"],"corresponding_institution_ids":["https://openalex.org/I865915315"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":4.294,"has_fulltext":true,"cited_by_count":89,"citation_normalized_percentile":{"value":0.95335816,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12643","display_name":"Sustainability and Ecological Systems Analysis","score":0.0032999999821186066,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8453971147537231},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7747694849967957},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6036568880081177},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.5700917840003967},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.495580792427063},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.49267250299453735},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48154786229133606},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4367257356643677},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4340323209762573},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36653661727905273},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3217412829399109},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.1065344512462616},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.09592840075492859}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8453971147537231},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7747694849967957},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6036568880081177},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.5700917840003967},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.495580792427063},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.49267250299453735},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48154786229133606},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4367257356643677},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4340323209762573},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36653661727905273},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3217412829399109},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.1065344512462616},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.09592840075492859},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1752-0509-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:22289213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22289213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:cwi.nl:19671","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/19671","pdf_url":"https://ir.cwi.nl/pub/19671/19671D.pdf","source":{"id":"https://openalex.org/S7407055335","display_name":"Centrum Wiskunde & Informatica (CWI), the national research institute for mathematics and computer science in the Netherlands","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology vol. 6 no. 8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:vu:oai:research.vu.nl:publications/dae9449e-0047-4bd1-9b80-34efbd011483","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/dae9449e-0047-4bd1-9b80-34efbd011483","pdf_url":"https://research.vu.nl/en/publications/dae9449e-0047-4bd1-9b80-34efbd011483","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 6:8. BioMed Central","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2326623","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3317868","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:research.vu.nl:Publications/dae9449e-0047-4bd1-9b80-34efbd011483","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400546","display_name":"Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1186/1752-0509-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-6-8","pdf_url":"https://bmcsystbiol.biomedcentral.com/track/pdf/10.1186/1752-0509-6-8","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976812345.pdf","grobid_xml":"https://content.openalex.org/works/W1976812345.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1695430372","https://openalex.org/W2048214825","https://openalex.org/W2075283200","https://openalex.org/W2098824895","https://openalex.org/W2098983518","https://openalex.org/W2100084634","https://openalex.org/W2102164505","https://openalex.org/W2117364474","https://openalex.org/W2127020923","https://openalex.org/W2140040278","https://openalex.org/W2147472054","https://openalex.org/W2150908245","https://openalex.org/W2156409537","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2170032647","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W1833372769","https://openalex.org/W1994518768","https://openalex.org/W104010570","https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2069162648","https://openalex.org/W1495449059","https://openalex.org/W2207495067","https://openalex.org/W1906486629","https://openalex.org/W2789551765"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,55],"creation":[2],"and":[3,58,76,99,115,119,156],"modification":[4],"of":[5,72,151],"genome-scale":[6],"metabolic":[7],"models":[8,79],"is":[9,62,95],"a":[10,25,81,112,116],"task":[11],"that":[12,68],"requires":[13],"specialized":[14],"software":[15],"tools.":[16],"While":[17],"these":[18,45],"are":[19],"available,":[20],"subsequently":[21],"running":[22],"or":[23],"visualizing":[24],"model":[26],"often":[27],"relies":[28],"on":[29,90],"disjoint":[30],"code,":[31],"which":[32],"adds":[33],"additional":[34],"actions":[35],"to":[36,154],"the":[37,63,70,101,131,147],"analysis":[38],"routine":[39,49],"and,":[40],"in":[41,97],"our":[42],"experience,":[43],"renders":[44],"applications":[46],"suboptimal":[47],"for":[48,104,142],"use":[50,153],"by":[51],"(systems)":[52],"biologists.":[53],"RESULTS:":[54],"Flux":[56],"Analysis":[57,84],"Modeling":[59],"Environment":[60],"(FAME)":[61],"first":[64],"web-based":[65,138],"modeling":[66],"tool":[67],"combines":[69],"tasks":[71],"creating,":[73],"editing,":[74],"running,":[75],"analyzing/visualizing":[77],"stoichiometric":[78,143],"into":[80],"single":[82],"program.":[83],"results":[85],"can":[86,120],"be":[87,121,150],"automatically":[88],"superimposed":[89],"familiar":[91],"KEGG-like":[92],"maps.":[93],"FAME":[94],"written":[96],"PHP":[98],"uses":[100],"Python-based":[102],"PySCeS-CBM":[103],"its":[105],"linear":[106],"solving":[107],"capabilities.":[108],"It":[109],"comes":[110],"with":[111,133],"comprehensive":[113],"manual":[114],"quick-start":[117],"tutorial,":[118],"accessed":[122],"online":[123],"at":[124],"http://f-a-m-e.org/.":[125],"CONCLUSIONS:":[126],"With":[127],"FAME,":[128],"we":[129],"present":[130],"community":[132],"an":[134],"open":[135],"source,":[136],"user-friendly,":[137],"\"one":[139],"stop":[140],"shop\"":[141],"modeling.":[144],"We":[145],"expect":[146],"application":[148],"will":[149],"substantial":[152],"investigators":[155],"educators":[157],"alike.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
