{"id":"https://openalex.org/W2151097405","doi":"https://doi.org/10.1186/1752-0509-5-s2-s15","title":"Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates","display_name":"Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates","publication_year":2011,"publication_date":"2011-12-01","ids":{"openalex":"https://openalex.org/W2151097405","doi":"https://doi.org/10.1186/1752-0509-5-s2-s15","mag":"2151097405","pmid":"https://pubmed.ncbi.nlm.nih.gov/22784572"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-s2-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s2-s15","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S2-S15","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S2-S15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Li C Xia","orcid":null},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li C Xia","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA","Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015047609","display_name":"Joshua A. Steele","orcid":"https://orcid.org/0000-0001-8023-8956"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua A Steele","raw_affiliation_strings":["Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA","Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009890882","display_name":"Jacob A. Cram","orcid":"https://orcid.org/0000-0001-9546-1130"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob A Cram","raw_affiliation_strings":["Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078375261","display_name":"Zo\u00eb G. Cardon","orcid":"https://orcid.org/0000-0001-8725-7842"},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zoe G Cardon","raw_affiliation_strings":["The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020753648","display_name":"Sheri L. Simmons","orcid":"https://orcid.org/0000-0001-7046-8862"},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheri L Simmons","raw_affiliation_strings":["Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086544907","display_name":"Joseph J. Vallino","orcid":"https://orcid.org/0000-0002-4184-4512"},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph J Vallino","raw_affiliation_strings":["The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA, 02543, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035958952","display_name":"Jed A. Fuhrman","orcid":"https://orcid.org/0000-0002-2361-1985"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jed A Fuhrman","raw_affiliation_strings":["Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Marine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-0371, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022255550","display_name":"Fengzhu Sun","orcid":"https://orcid.org/0000-0002-8552-043X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fengzhu Sun","raw_affiliation_strings":["Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089-2910, USA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022255550"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.433,"has_fulltext":true,"cited_by_count":265,"citation_normalized_percentile":{"value":0.89634529,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"5","issue":"S2","first_page":"S15","last_page":"S15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.24279999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.24279999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.21299999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.08869999647140503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6213207840919495},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.5608052015304565},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5583081841468811},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5097772479057312},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5027675628662109},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4733811914920807},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.46304967999458313},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.4100021719932556},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3729703426361084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23403257131576538},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1960436999797821},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1608404517173767}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6213207840919495},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.5608052015304565},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5583081841468811},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5097772479057312},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5027675628662109},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4733811914920807},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.46304967999458313},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.4100021719932556},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3729703426361084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23403257131576538},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1960436999797821},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1608404517173767},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1752-0509-5-s2-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s2-s15","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S2-S15","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:22784572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22784572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:30268","is_oa":true,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20120424-080111138","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:darchive.mblwhoilibrary.org:1912/5148","is_oa":true,"landing_page_url":"https://hdl.handle.net/1912/5148","pdf_url":null,"source":{"id":"https://openalex.org/S4306400781","display_name":"Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:760d5c6430d54532ade39c4be0b64e31","is_oa":false,"landing_page_url":"https://doaj.org/article/760d5c6430d54532ade39c4be0b64e31","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 5, Iss Suppl 2, p S15 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3287481","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3287481","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-s2-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s2-s15","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S2-S15","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4399999976158142,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4312827993","display_name":"ATD: Computational Analysis of Metagenomic Sequencing Data","funder_award_id":"1043075","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4895756154","display_name":"Dimensions: Pattern and Process in Marine Bacterial, Archaeal, and Protistan Biodiversity, and Effects of Human Impacts","funder_award_id":"1136818","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308668","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151097405.pdf","grobid_xml":"https://content.openalex.org/works/W2151097405.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1513618424","https://openalex.org/W1964895626","https://openalex.org/W1995945562","https://openalex.org/W1996643816","https://openalex.org/W2008350594","https://openalex.org/W2014320894","https://openalex.org/W2019997982","https://openalex.org/W2024471867","https://openalex.org/W2028829346","https://openalex.org/W2031663221","https://openalex.org/W2045775570","https://openalex.org/W2065448311","https://openalex.org/W2065912508","https://openalex.org/W2097265502","https://openalex.org/W2101575345","https://openalex.org/W2104854813","https://openalex.org/W2108675631","https://openalex.org/W2114771156","https://openalex.org/W2117683904","https://openalex.org/W2121596680","https://openalex.org/W2129920902","https://openalex.org/W2132088881","https://openalex.org/W2134188304","https://openalex.org/W2137531873","https://openalex.org/W2139845570","https://openalex.org/W2154066898","https://openalex.org/W2160870047","https://openalex.org/W2161175828","https://openalex.org/W2164910356","https://openalex.org/W2165823089","https://openalex.org/W2171022403","https://openalex.org/W2344672672","https://openalex.org/W3104024536","https://openalex.org/W4252310231","https://openalex.org/W4310299640"],"related_works":["https://openalex.org/W2953716828","https://openalex.org/W2904857019","https://openalex.org/W2944728705","https://openalex.org/W3011538607","https://openalex.org/W2904022177","https://openalex.org/W2591697403","https://openalex.org/W4321441197","https://openalex.org/W2359348847","https://openalex.org/W4294432981","https://openalex.org/W4321276295"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,150,186,228],"increasing":[2],"availability":[3],"of":[4,21,85,97,131,210,225],"time":[5,55,75,115,205],"series":[6,56,76,116,206],"microbial":[7,23,173],"community":[8,174],"data":[9,57,77,117,154,207],"from":[10,241],"metagenomics":[11],"and":[12,25,47,51,102,120,136,162,175,198,237],"other":[13],"molecular":[14],"biological":[15,226],"studies":[16],"has":[17],"enabled":[18],"the":[19,29,34,82,95,129,141,169,222,235,242],"analysis":[20,189,236],"large-scale":[22],"co-occurrence":[24,50],"association":[26,52,163,201],"networks.":[27],"Among":[28],"many":[30],"analytical":[31],"techniques":[32],"available,":[33],"Local":[35],"Similarity":[36],"Analysis":[37],"(LSA)":[38],"method":[39],"is":[40,91,238],"unique":[41,180],"in":[42,54,203],"that":[43,58,209],"it":[44,90,122],"captures":[45],"local":[46,98,197],"potentially":[48,199],"time-delayed":[49,137,200],"patterns":[53,202],"cannot":[59],"otherwise":[60],"be":[61,247],"identified":[62],"by":[63],"ordinary":[64,211],"correlation":[65,157,212],"analysis.":[66,213],"However":[67],"LSA,":[68,124],"as":[69],"originally":[70],"developed,":[71],"does":[72],"not":[73],"consider":[74],"with":[78,118],"replicates,":[79,89],"which":[80,245],"hinders":[81],"full":[83],"exploitation":[84],"available":[86,240],"information.":[87],"With":[88],"possible":[92],"to":[93,103,114,133,172,193,221],"understand":[94],"variability":[96],"similarity":[99],"(LS)":[100],"score":[101],"obtain":[104],"its":[105],"confidence":[106],"interval.":[107],"RESULTS:":[108],"We":[109,139,167],"extended":[110,123,187],"our":[111],"LSA":[112,188],"technique":[113,143,171,190],"replicates":[119],"termed":[121],"or":[125],"eLSA.":[126],"Simulations":[127],"showed":[128],"capability":[130],"eLSA":[132,142,170,231,243],"capture":[134],"subinterval":[135],"associations.":[138],"implemented":[140],"into":[144],"an":[145],"easy-to-use":[146],"analytic":[147],"software":[148,151,232],"package.":[149],"pipeline":[152],"integrates":[153],"normalization,":[155],"statistical":[156,159],"calculation,":[158],"significance":[160],"evaluation,":[161],"network":[164],"construction":[165],"steps.":[166],"applied":[168],"gene":[176],"expression":[177],"datasets,":[178],"where":[179],"time-dependent":[181],"associations":[182,217],"were":[183],"identified.":[184],"CONCLUSIONS:":[185],"was":[191],"demonstrated":[192],"reveal":[194],"statistically":[195,215],"significant":[196,216],"replicated":[204],"beyond":[208],"These":[214],"can":[218,246],"provide":[219],"insights":[220],"real":[223],"dynamics":[224],"systems.":[227],"newly":[229],"designed":[230],"efficiently":[233],"streamlines":[234],"freely":[239],"homepage,":[244],"accessed":[248],"at":[249],"http://meta.usc.edu/softs/lsa.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":33},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":4}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
