{"id":"https://openalex.org/W2156136208","doi":"https://doi.org/10.1186/1752-0509-5-s1-s7","title":"MetaDBSite: a meta approach to improve protein DNA-binding sites prediction","display_name":"MetaDBSite: a meta approach to improve protein DNA-binding sites prediction","publication_year":2011,"publication_date":"2011-06-20","ids":{"openalex":"https://openalex.org/W2156136208","doi":"https://doi.org/10.1186/1752-0509-5-s1-s7","mag":"2156136208","pmid":"https://pubmed.ncbi.nlm.nih.gov/21689482"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S1-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029445006","display_name":"Jing-Na Si","orcid":null},"institutions":[{"id":"https://openalex.org/I105126617","display_name":"Zhejiang International Studies University","ror":"https://ror.org/01vwvvq12","country_code":"CN","type":"education","lineage":["https://openalex.org/I105126617"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingna Si","raw_affiliation_strings":["Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, Hangzhou, China","Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, Hangzhou, China","institution_ids":["https://openalex.org/I105126617"]},{"raw_affiliation_string":"Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018201087","display_name":"Zengming Zhang","orcid":"https://orcid.org/0000-0001-8245-9955"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zengming Zhang","raw_affiliation_strings":["Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048050210","display_name":"Biaoyang Lin","orcid":"https://orcid.org/0000-0002-2189-0407"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Biaoyang Lin","raw_affiliation_strings":["Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Schroeder","raw_affiliation_strings":["Bioinformatics Group, Biotechnology Center, Technical University of Dresden, Tatzbergstr 47, 01307, Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Biotechnology Center, Technical University of Dresden, Tatzbergstr 47, 01307, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015878061","display_name":"Bingding Huang","orcid":"https://orcid.org/0000-0002-4748-2882"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["CN","DE"],"is_corresponding":true,"raw_author_name":"Bingding Huang","raw_affiliation_strings":["Bioinformatics Group, Biotechnology Center, Technical University of Dresden, Tatzbergstr 47, 01307, Dresden, Germany","Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Biotechnology Center, Technical University of Dresden, Tatzbergstr 47, 01307, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, 310029, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015878061"],"corresponding_institution_ids":["https://openalex.org/I76130692","https://openalex.org/I78650965"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.1897,"has_fulltext":true,"cited_by_count":95,"citation_normalized_percentile":{"value":0.88184836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"5","issue":"S1","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8389000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8389000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.042399998754262924,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.037300001829862595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.653306245803833},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5774008631706238},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5227642059326172},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.507689356803894},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.4830056428909302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46923667192459106},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.466964989900589},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4653742015361786},{"id":"https://openalex.org/keywords/hmg-box","display_name":"HMG-box","score":0.45880523324012756},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4364092946052551},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4362519085407257},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4316384792327881},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34165436029434204},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29262492060661316},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.27022868394851685},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1663753092288971},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.1461333930492401},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1142924427986145},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.10523062944412231}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.653306245803833},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5774008631706238},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5227642059326172},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.507689356803894},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.4830056428909302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46923667192459106},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.466964989900589},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4653742015361786},{"id":"https://openalex.org/C5179208","wikidata":"https://www.wikidata.org/wiki/Q3782057","display_name":"HMG-box","level":5,"score":0.45880523324012756},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4364092946052551},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4362519085407257},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4316384792327881},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34165436029434204},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29262492060661316},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.27022868394851685},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1663753092288971},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.1461333930492401},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1142924427986145},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.10523062944412231}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-5-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:21689482","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21689482","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.645.892","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.645.892","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.aporc.org/LNOR/13/ISB2010F35.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:e678ffc26cb94e7eb8bbef44d80ae285","is_oa":false,"landing_page_url":"https://doaj.org/article/e678ffc26cb94e7eb8bbef44d80ae285","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 5, Iss Suppl 1, p S7 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3121123","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3121123","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156136208.pdf","grobid_xml":"https://content.openalex.org/works/W2156136208.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1491553314","https://openalex.org/W1543773936","https://openalex.org/W1969104449","https://openalex.org/W1971894358","https://openalex.org/W2051167924","https://openalex.org/W2089716128","https://openalex.org/W2096986143","https://openalex.org/W2122231230","https://openalex.org/W2124005542","https://openalex.org/W2128533758","https://openalex.org/W2130479394","https://openalex.org/W2149997286","https://openalex.org/W2156125289","https://openalex.org/W2165745599","https://openalex.org/W2166248605","https://openalex.org/W2395220246"],"related_works":["https://openalex.org/W2586219588","https://openalex.org/W2030922238","https://openalex.org/W1870851597","https://openalex.org/W2099901107","https://openalex.org/W1776902257","https://openalex.org/W2148072770","https://openalex.org/W1926921733","https://openalex.org/W1974642429","https://openalex.org/W2028056900","https://openalex.org/W2052894840"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-DNA":[1],"interactions":[2],"play":[3],"an":[4],"important":[5],"role":[6],"in":[7,25],"many":[8],"fundamental":[9],"biological":[10],"activities":[11],"such":[12],"as":[13,124],"DNA":[14,26],"replication,":[15],"transcription":[16],"and":[17,98,100,121,133,157,173],"repair.":[18],"Identification":[19],"of":[20,33,36,48,106,111],"amino":[21],"acid":[22],"residues":[23,78,163],"involved":[24],"binding":[27,55],"site":[28],"is":[29,114,168],"critical":[30],"for":[31,79,160],"understanding":[32],"the":[34,40,84,117,130,134],"mechanism":[35],"gene":[37],"regulations.":[38],"In":[39,65],"last":[41],"decade,":[42],"there":[43],"have":[44],"been":[45],"a":[46,71,125,155],"number":[47],"computational":[49],"approaches":[50],"developed":[51],"to":[52,75,128],"predict":[53,76],"protein-DNA":[54],"sites":[56],"based":[57],"on":[58],"protein":[59,161],"sequence":[60,104],"and/or":[61],"structural":[62],"information.":[63],"RESULTS:":[64],"this":[66],"article,":[67],"we":[68],"present":[69],"metaDBSite,":[70],"meta":[72],"web":[73,91],"server":[74],"DNA-binding":[77,80,112,162],"proteins.":[81,107],"MetaDBSite":[82,166],"integrates":[83],"prediction":[85],"results":[86,141],"from":[87,116],"six":[88,136],"available":[89,170],"online":[90],"servers:":[92],"DISIS,":[93],"DNABindR,":[94],"BindN,":[95],"BindN-rf,":[96],"DP-Bind":[97],"DBS-PRED":[99],"it":[101,122],"solely":[102],"uses":[103],"information":[105],"A":[108],"large":[109],"dataset":[110],"proteins":[113],"constructed":[115],"Protein":[118],"Data":[119],"Bank":[120],"serves":[123],"gold-standard":[126],"benchmark":[127],"evaluate":[129],"metaDBSite":[131,144,152],"approach":[132],"other":[135],"predictors.":[137],"CONCLUSIONS:":[138],"The":[139,165],"comparison":[140],"show":[142],"that":[143,151],"outperforms":[145],"single":[146],"individual":[147],"approach.":[148],"We":[149],"believe":[150],"will":[153],"become":[154],"useful":[156],"integrative":[158],"tool":[159],"prediction.":[164],"web-server":[167],"freely":[169],"at":[171],"http://projects.biotec.tu-dresden.de/metadbsite/":[172],"http://sysbio.zju.edu.cn/metadbsite.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
