{"id":"https://openalex.org/W2107306112","doi":"https://doi.org/10.1186/1752-0509-5-83","title":"Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction","display_name":"Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction","publication_year":2011,"publication_date":"2011-05-25","ids":{"openalex":"https://openalex.org/W2107306112","doi":"https://doi.org/10.1186/1752-0509-5-83","mag":"2107306112","pmid":"https://pubmed.ncbi.nlm.nih.gov/21609491"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-83","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-83","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-83","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111826948","display_name":"Kechi Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kechi Fang","raw_affiliation_strings":["Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China","Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210131870"]},{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025806090","display_name":"Hansheng Zhao","orcid":"https://orcid.org/0000-0002-5405-0375"},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]},{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hansheng Zhao","raw_affiliation_strings":["College of Biological Sciences, China Agricultural University, Beijing, 100193, China","Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biological Sciences, China Agricultural University, Beijing, 100193, China","institution_ids":["https://openalex.org/I52158045"]},{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102048927","display_name":"Changyue Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changyue Sun","raw_affiliation_strings":["Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111894294","display_name":"Carolyn MC Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carolyn MC Lam","raw_affiliation_strings":["Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019840354","display_name":"Suhua Chang","orcid":"https://orcid.org/0000-0001-7465-3985"},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Suhua Chang","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences, Beijing, 100101, China","Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103101594","display_name":"Kunlin Zhang","orcid":"https://orcid.org/0000-0003-0807-5755"},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kunlin Zhang","raw_affiliation_strings":["Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052363500","display_name":"Gurudutta Panda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gurudutta Panda","raw_affiliation_strings":["Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010999442","display_name":"Miguel Godinho","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210144647","display_name":"C\u00e2mara Municipal de Almada","ror":"https://ror.org/04ym5ed21","country_code":"PT","type":"other","lineage":["https://openalex.org/I4210144647"]}],"countries":["DE","PT"],"is_corresponding":false,"raw_author_name":"Miguel Godinho","raw_affiliation_strings":["Lifewizz Lda, Rua Pero de Alenquer 123 7 E, 4150-616, Porto, Portugal","Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lifewizz Lda, Rua Pero de Alenquer 123 7 E, 4150-616, Porto, Portugal","institution_ids":["https://openalex.org/I4210144647"]},{"raw_affiliation_string":"Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039324414","display_name":"V\u00edtor A. P. Martins dos Santos","orcid":"https://orcid.org/0000-0002-2352-9017"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["DE","NL"],"is_corresponding":true,"raw_author_name":"V\u00edtor AP Martins dos Santos","raw_affiliation_strings":["Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany","Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, 6703, HB, Wageningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems and Synthetic Biology Group, Helmholtz Center for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, 6703, HB, Wageningen, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100378372","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0001-8218-1981"},"institutions":[{"id":"https://openalex.org/I4210131870","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210131870"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jing Wang","raw_affiliation_strings":["Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, 100101, China","institution_ids":["https://openalex.org/I4210131870"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039324414","https://openalex.org/A5100378372"],"corresponding_institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I4210131870","https://openalex.org/I913481162"],"apc_list":null,"apc_paid":null,"fwci":4.9562,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.95323021,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"83","last_page":"83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.33880001306533813,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.33880001306533813,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.16249999403953552,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.07810000330209732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/burkholderia-cenocepacia","display_name":"Burkholderia cenocepacia","score":0.9573442935943604},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.6852155327796936},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6686142683029175},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6119492053985596},{"id":"https://openalex.org/keywords/burkholderia-cepacia-complex","display_name":"Burkholderia cepacia complex","score":0.5817674398422241},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.5542982220649719},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4901791214942932},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4512284994125366},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.4172958433628082},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.4165189564228058},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3572935461997986},{"id":"https://openalex.org/keywords/burkholderia","display_name":"Burkholderia","score":0.2225247323513031},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.12915152311325073}],"concepts":[{"id":"https://openalex.org/C2777979451","wikidata":"https://www.wikidata.org/wiki/Q4810500","display_name":"Burkholderia cenocepacia","level":4,"score":0.9573442935943604},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.6852155327796936},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6686142683029175},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6119492053985596},{"id":"https://openalex.org/C2777756538","wikidata":"https://www.wikidata.org/wiki/Q21401468","display_name":"Burkholderia cepacia complex","level":4,"score":0.5817674398422241},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.5542982220649719},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4901791214942932},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4512284994125366},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4172958433628082},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4165189564228058},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3572935461997986},{"id":"https://openalex.org/C2780855054","wikidata":"https://www.wikidata.org/wiki/Q135239","display_name":"Burkholderia","level":3,"score":0.2225247323513031},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.12915152311325073}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008070","descriptor_name":"Lipopolysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008070","descriptor_name":"Lipopolysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008070","descriptor_name":"Lipopolysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018533","descriptor_name":"Biomass","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019121","descriptor_name":"Burkholderia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D019121","descriptor_name":"Burkholderia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D019121","descriptor_name":"Burkholderia Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057508","descriptor_name":"Burkholderia cenocepacia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057508","descriptor_name":"Burkholderia cenocepacia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057508","descriptor_name":"Burkholderia cenocepacia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/1752-0509-5-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-83","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-83","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:21609491","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21609491","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/324347","is_oa":true,"landing_page_url":"http://hdl.handle.net/10033/324347","pdf_url":"https://repository.helmholtz-hzi.de/bitstream/10033/324347/1/Fang%20et%20al_final.pdf","source":{"id":"https://openalex.org/S7407055272","display_name":"Helmholtz Zentrum f\u00fcr Infektionsforschung Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:32270dbbbcba4eaca06c3a42c3a1720d","is_oa":false,"landing_page_url":"https://doaj.org/article/32270dbbbcba4eaca06c3a42c3a1720d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 5, Iss 1, p 83 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2139813","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3123600","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:hzi.openrepository.com:10033/620683","is_oa":false,"landing_page_url":"http://hdl.handle.net/10033/620683","pdf_url":null,"source":{"id":"https://openalex.org/S4306400447","display_name":"HZI Open Repository (Helmholtz-Zentrum f\u00fcr Infektionsforschung GmbH)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3018134672","host_organization_name":"Helmholtz Zentrum M\u00fcnchen","host_organization_lineage":["https://openalex.org/I3018134672"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:ir.psych.ac.cn:311026/11511","is_oa":false,"landing_page_url":"http://ir.psych.ac.cn/handle/311026/11511","pdf_url":null,"source":{"id":"https://openalex.org/S4377196583","display_name":"Institutional Repository of Institute of Psychology, Chinese Academy of Sciences (Institute of Psychology, Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210131870","host_organization_name":"Institute of Psychology, Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I4210131870"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/620683","is_oa":false,"landing_page_url":"http://doi.org/10.1186/1752-0509-5-83","pdf_url":null,"source":{"id":"https://openalex.org/S7407055272","display_name":"Helmholtz Zentrum f\u00fcr Infektionsforschung Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/409472","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/exploring-the-metabolic-network-of-the-epidemic-pathogen-burkhold","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 5","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-83","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-83","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-83","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8600000143051147}],"awards":[{"id":"https://openalex.org/G1377785","display_name":null,"funder_award_id":"2011CBA00802","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6280165074","display_name":null,"funder_award_id":"973 Program","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G7257051450","display_name":"The Microme Project: A Knowledge-Based Bioinformatics Framework for Microbial Pathway Genomics","funder_award_id":"222886","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336163","display_name":"Institute of Psychology, Chinese Academy of Sciences","ror":"https://ror.org/03j7v5j15"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107306112.pdf","grobid_xml":"https://content.openalex.org/works/W2107306112.grobid-xml"},"referenced_works_count":101,"referenced_works":["https://openalex.org/W1529647091","https://openalex.org/W1543388089","https://openalex.org/W1546783991","https://openalex.org/W1563397350","https://openalex.org/W1661350049","https://openalex.org/W1814208186","https://openalex.org/W1959135841","https://openalex.org/W1965558010","https://openalex.org/W1968372198","https://openalex.org/W1969421591","https://openalex.org/W1970335626","https://openalex.org/W1971821286","https://openalex.org/W1976013942","https://openalex.org/W1992306474","https://openalex.org/W1996614254","https://openalex.org/W2005884838","https://openalex.org/W2007389208","https://openalex.org/W2009313526","https://openalex.org/W2010877382","https://openalex.org/W2011537739","https://openalex.org/W2013198636","https://openalex.org/W2017616511","https://openalex.org/W2018718318","https://openalex.org/W2025399691","https://openalex.org/W2033557727","https://openalex.org/W2037178359","https://openalex.org/W2038188372","https://openalex.org/W2040628751","https://openalex.org/W2041115195","https://openalex.org/W2045780029","https://openalex.org/W2052125256","https://openalex.org/W2055903497","https://openalex.org/W2059546521","https://openalex.org/W2066918275","https://openalex.org/W2074037713","https://openalex.org/W2083346840","https://openalex.org/W2090162424","https://openalex.org/W2092014535","https://openalex.org/W2093263667","https://openalex.org/W2094106933","https://openalex.org/W2096245011","https://openalex.org/W2097607570","https://openalex.org/W2097738501","https://openalex.org/W2097944090","https://openalex.org/W2100266303","https://openalex.org/W2100925698","https://openalex.org/W2101113695","https://openalex.org/W2103074326","https://openalex.org/W2103256455","https://openalex.org/W2105500136","https://openalex.org/W2107347870","https://openalex.org/W2107459209","https://openalex.org/W2109638827","https://openalex.org/W2110219060","https://openalex.org/W2110845902","https://openalex.org/W2111842378","https://openalex.org/W2112688938","https://openalex.org/W2115308874","https://openalex.org/W2117963910","https://openalex.org/W2118512529","https://openalex.org/W2118549950","https://openalex.org/W2120115446","https://openalex.org/W2120348757","https://openalex.org/W2120468912","https://openalex.org/W2122261141","https://openalex.org/W2123057006","https://openalex.org/W2123966372","https://openalex.org/W2124283003","https://openalex.org/W2125066248","https://openalex.org/W2127435259","https://openalex.org/W2127872845","https://openalex.org/W2128429807","https://openalex.org/W2128671556","https://openalex.org/W2130952076","https://openalex.org/W2132666490","https://openalex.org/W2133425351","https://openalex.org/W2135292934","https://openalex.org/W2135877084","https://openalex.org/W2143530682","https://openalex.org/W2144000913","https://openalex.org/W2144944670","https://openalex.org/W2145253648","https://openalex.org/W2148703390","https://openalex.org/W2148831502","https://openalex.org/W2149341297","https://openalex.org/W2151906718","https://openalex.org/W2151999391","https://openalex.org/W2152193238","https://openalex.org/W2157589025","https://openalex.org/W2159299078","https://openalex.org/W2161062388","https://openalex.org/W2162237022","https://openalex.org/W2165529552","https://openalex.org/W2165674132","https://openalex.org/W2170427655","https://openalex.org/W2170691243","https://openalex.org/W2290826077","https://openalex.org/W2332710792","https://openalex.org/W2927415920","https://openalex.org/W4211054902","https://openalex.org/W4249242093"],"related_works":["https://openalex.org/W2172036799","https://openalex.org/W1992145973","https://openalex.org/W2160389489","https://openalex.org/W2151883598","https://openalex.org/W2065214355","https://openalex.org/W2138506519","https://openalex.org/W2415893607","https://openalex.org/W1947394714","https://openalex.org/W1850914961","https://openalex.org/W4378902411"],"abstract_inverted_index":{"BACKGROUND:":[0],"Burkholderia":[1],"cenocepacia":[2,37,60,89,124,168,215,228],"is":[3,26,39,48],"a":[4,16,49,54,100,127,219,245],"threatening":[5],"nosocomial":[6],"epidemic":[7],"pathogen":[8],"in":[9,30,140],"patients":[10],"with":[11,126],"cystic":[12],"fibrosis":[13],"(CF)":[14],"or":[15],"compromised":[17],"immune":[18],"system.":[19],"Its":[20],"high":[21],"level":[22],"of":[23,58,87,99,122,133,144,166,196,213,222,226],"antibiotic":[24],"resistance":[25],"an":[27],"increasing":[28],"concern":[29],"treatments":[31],"against":[32,252],"its":[33,65,69,230],"infection.":[34],"Strain":[35],"B.":[36,59,88,123,167,214,227],"J2315":[38,61,125,169],"the":[40,83,97,131,142,161,163,189,208,223,236],"most":[41],"infectious":[42],"isolate":[43],"from":[44],"CF":[45,237],"patients.":[46],"There":[47],"strong":[50],"demand":[51],"to":[52,62,73,96,138,184,248],"reconstruct":[53],"genome-scale":[55,84,210],"metabolic":[56,66,85,120,135,211,224,232],"network":[57,86,212],"systematically":[63],"analyze":[64],"capabilities":[67,121],"and":[68,72,112,147,172,179,192,229],"virulence":[70,136,233],"traits,":[71],"search":[74],"for":[75,106],"potential":[76,149,203],"clinical":[77],"therapy":[78],"targets.":[79,151,205],"RESULTS:":[80],"We":[81],"reconstructed":[82],"J2315.":[90],"An":[91],"iterative":[92],"reconstruction":[93],"process":[94],"led":[95],"establishment":[98],"robust":[101],"model,":[102,162],"iKF1028,":[103],"which":[104],"accounts":[105],"1,028":[107],"genes,":[108],"859":[109],"internal":[110],"reactions,":[111],"834":[113],"metabolites.":[114],"The":[115,152,239],"model":[116,153,240],"iKF1028":[117,217],"captures":[118],"important":[119],"particular":[128],"focus":[129],"on":[130,160],"biosyntheses":[132],"key":[134,231],"factors":[137,234],"assist":[139],"understanding":[141],"mechanism":[143],"disease":[145],"infection":[146],"identifying":[148],"drug":[150],"was":[154,170],"tested":[155],"through":[156],"BIOLOG":[157],"assays.":[158],"Based":[159],"genome":[164,190],"annotation":[165],"refined":[171],"24":[173],"genes":[174],"were":[175,182,200],"properly":[176],"re-annotated.":[177],"Gene":[178],"enzyme":[180],"essentiality":[181],"analyzed":[183],"provide":[185],"further":[186],"insights":[187],"into":[188],"function":[191],"architecture.":[193],"A":[194],"total":[195],"45":[197],"essential":[198],"enzymes":[199],"identified":[201],"as":[202,244],"therapeutic":[204],"CONCLUSIONS:":[206],"As":[207],"first":[209],"J2315,":[216],"allows":[218],"systematic":[220],"study":[221],"properties":[225],"affecting":[235],"community.":[238],"can":[241],"be":[242],"used":[243],"discovery":[246],"tool":[247],"design":[249],"novel":[250],"drugs":[251],"diseases":[253],"caused":[254],"by":[255],"this":[256],"notorious":[257],"pathogen.":[258]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
