{"id":"https://openalex.org/W1968363067","doi":"https://doi.org/10.1186/1752-0509-5-38","title":"Knowledge management for Systems Biology a general and visually driven framework applied to translational medicine","display_name":"Knowledge management for Systems Biology a general and visually driven framework applied to translational medicine","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1968363067","doi":"https://doi.org/10.1186/1752-0509-5-38","mag":"1968363067","pmid":"https://pubmed.ncbi.nlm.nih.gov/21375767"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-38","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-38","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-38","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101932607","display_name":"Dieter Maier","orcid":"https://orcid.org/0000-0003-1208-2093"},"institutions":[{"id":"https://openalex.org/I105862471","display_name":"Biomax Informatics (Germany)","ror":"https://ror.org/02h1y5y54","country_code":"DE","type":"company","lineage":["https://openalex.org/I105862471"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dieter Maier","raw_affiliation_strings":["Biomax Informatics AG, Planegg, Germany. dieter.maier@biomax.com","Biomax Informatics AG , Planegg, Germany"],"affiliations":[{"raw_affiliation_string":"Biomax Informatics AG, Planegg, Germany. dieter.maier@biomax.com","institution_ids":["https://openalex.org/I105862471"]},{"raw_affiliation_string":"Biomax Informatics AG , Planegg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058277937","display_name":"Wenzel Kalus","orcid":null},"institutions":[{"id":"https://openalex.org/I105862471","display_name":"Biomax Informatics (Germany)","ror":"https://ror.org/02h1y5y54","country_code":"DE","type":"company","lineage":["https://openalex.org/I105862471"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wenzel Kalus","raw_affiliation_strings":["Biomax Informatics AG, Planegg, Germany","Biomax Informatics AG , Planegg, Germany"],"affiliations":[{"raw_affiliation_string":"Biomax Informatics AG, Planegg, Germany","institution_ids":["https://openalex.org/I105862471"]},{"raw_affiliation_string":"Biomax Informatics AG , Planegg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072753271","display_name":"Martin Wolff","orcid":"https://orcid.org/0000-0003-0035-8726"},"institutions":[{"id":"https://openalex.org/I105862471","display_name":"Biomax Informatics (Germany)","ror":"https://ror.org/02h1y5y54","country_code":"DE","type":"company","lineage":["https://openalex.org/I105862471"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Wolff","raw_affiliation_strings":["Biomax Informatics AG, Planegg, Germany","Biomax Informatics AG , Planegg, Germany"],"affiliations":[{"raw_affiliation_string":"Biomax Informatics AG, Planegg, Germany","institution_ids":["https://openalex.org/I105862471"]},{"raw_affiliation_string":"Biomax Informatics AG , Planegg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050234475","display_name":"Susana G. Kalko","orcid":"https://orcid.org/0000-0002-6701-0233"},"institutions":[{"id":"https://openalex.org/I4210115097","display_name":"Hospital Cl\u00ednic de Barcelona","ror":"https://ror.org/02a2kzf50","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210115097"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Susana G Kalko","raw_affiliation_strings":["Hospital Clinic-IDIBAPS-CIBERES, Universitat de Barcelona, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Hospital Clinic-IDIBAPS-CIBERES, Universitat de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I4210115097","https://openalex.org/I71999127","https://openalex.org/I4210160192","https://openalex.org/I4210099160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042593224","display_name":"Josep Roca","orcid":"https://orcid.org/0000-0003-4768-8722"},"institutions":[{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210115097","display_name":"Hospital Cl\u00ednic de Barcelona","ror":"https://ror.org/02a2kzf50","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210115097"]},{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Roca","raw_affiliation_strings":["Hospital Clinic-IDIBAPS-CIBERES, Universitat de Barcelona, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Hospital Clinic-IDIBAPS-CIBERES, Universitat de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I4210115097","https://openalex.org/I71999127","https://openalex.org/I4210160192","https://openalex.org/I4210099160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019443273","display_name":"Igor Mar\u00edn de Mas","orcid":"https://orcid.org/0000-0003-2925-8155"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Igor Marin de Mas","raw_affiliation_strings":["Departament de Bioquimica i Biologia Molecular, Institut de Biomedicina at Universitat de Barcelona IBUB and IDIBAPS-Hospital Clinic, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Departament de Bioquimica i Biologia Molecular, Institut de Biomedicina at Universitat de Barcelona IBUB and IDIBAPS-Hospital Clinic, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127","https://openalex.org/I4210160192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102841226","display_name":"Nil Turan","orcid":"https://orcid.org/0000-0002-6841-4395"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nil Turan","raw_affiliation_strings":["School of Biosciences and Institute of Biomedical Research (IBR), University of Birmingham, Birmingham, UK"],"affiliations":[{"raw_affiliation_string":"School of Biosciences and Institute of Biomedical Research (IBR), University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089973047","display_name":"Marta Cascante","orcid":"https://orcid.org/0000-0002-2062-4633"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210160192","display_name":"Consorci Institut D'Investigacions Biomediques August Pi I Sunyer","ror":"https://ror.org/054vayn55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210160192","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Cascante","raw_affiliation_strings":["Departament de Bioquimica i Biologia Molecular, Institut de Biomedicina at Universitat de Barcelona IBUB and IDIBAPS-Hospital Clinic, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Departament de Bioquimica i Biologia Molecular, Institut de Biomedicina at Universitat de Barcelona IBUB and IDIBAPS-Hospital Clinic, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127","https://openalex.org/I4210160192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082775010","display_name":"Francesco Falciani","orcid":"https://orcid.org/0000-0003-1432-2871"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Francesco Falciani","raw_affiliation_strings":["School of Biosciences and Institute of Biomedical Research (IBR), University of Birmingham, Birmingham, UK"],"affiliations":[{"raw_affiliation_string":"School of Biosciences and Institute of Biomedical Research (IBR), University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089737584","display_name":"Miguel \u00c1ngel Ib\u00e1\u00f1ez-Hern\u00e1ndez","orcid":"https://orcid.org/0000-0003-4013-6888"},"institutions":[{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Hernandez","raw_affiliation_strings":["Computational Biochemistry and Biophysics lab, Research Unit on Biomedical Informatics (GRIB) of IMIM/UPF, Parc de Recerca Biomdica de Barcelona (PRBB), Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biochemistry and Biophysics lab, Research Unit on Biomedical Informatics (GRIB) of IMIM/UPF, Parc de Recerca Biomdica de Barcelona (PRBB), Barcelona, Spain","institution_ids":["https://openalex.org/I2801864671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040299887","display_name":"Jordi Vill\u00e0\u2010Freixa","orcid":"https://orcid.org/0000-0002-6359-3929"},"institutions":[{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Villa-Freixa","raw_affiliation_strings":["Computational Biochemistry and Biophysics lab, Research Unit on Biomedical Informatics (GRIB) of IMIM/UPF, Parc de Recerca Biomdica de Barcelona (PRBB), Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Biochemistry and Biophysics lab, Research Unit on Biomedical Informatics (GRIB) of IMIM/UPF, Parc de Recerca Biomdica de Barcelona (PRBB), Barcelona, Spain","institution_ids":["https://openalex.org/I2801864671"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067429146","display_name":"Sascha Losko","orcid":"https://orcid.org/0000-0003-1479-0712"},"institutions":[{"id":"https://openalex.org/I105862471","display_name":"Biomax Informatics (Germany)","ror":"https://ror.org/02h1y5y54","country_code":"DE","type":"company","lineage":["https://openalex.org/I105862471"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sascha Losko","raw_affiliation_strings":["Biomax Informatics AG, Planegg, Germany","Biomax Informatics AG , Planegg, Germany"],"affiliations":[{"raw_affiliation_string":"Biomax Informatics AG, Planegg, Germany","institution_ids":["https://openalex.org/I105862471"]},{"raw_affiliation_string":"Biomax Informatics AG , Planegg, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5101932607"],"corresponding_institution_ids":["https://openalex.org/I105862471"],"apc_list":null,"apc_paid":null,"fwci":3.6017,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.93527283,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"38","last_page":"38"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.7061800956726074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6906994581222534},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6219208240509033},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5875544548034668},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5789901614189148},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.48868706822395325},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48812636733055115},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.48085910081863403},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.4616616368293762},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44399142265319824},{"id":"https://openalex.org/keywords/translational-medicine","display_name":"Translational medicine","score":0.4384865164756775},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4365718364715576},{"id":"https://openalex.org/keywords/translational-research","display_name":"Translational research","score":0.42763152718544006},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.42708611488342285},{"id":"https://openalex.org/keywords/systems-medicine","display_name":"Systems medicine","score":0.4259769320487976},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32893770933151245},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.2961333990097046},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29478922486305237},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2755734920501709},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15504148602485657},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14742353558540344}],"concepts":[{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.7061800956726074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6906994581222534},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6219208240509033},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5875544548034668},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5789901614189148},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.48868706822395325},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48812636733055115},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.48085910081863403},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.4616616368293762},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44399142265319824},{"id":"https://openalex.org/C162264550","wikidata":"https://www.wikidata.org/wiki/Q17112037","display_name":"Translational medicine","level":2,"score":0.4384865164756775},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4365718364715576},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.42763152718544006},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.42708611488342285},{"id":"https://openalex.org/C36415437","wikidata":"https://www.wikidata.org/wiki/Q7663871","display_name":"Systems medicine","level":3,"score":0.4259769320487976},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32893770933151245},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.2961333990097046},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29478922486305237},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2755734920501709},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15504148602485657},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14742353558540344},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029424","descriptor_name":"Pulmonary Disease, Chronic Obstructive","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D029424","descriptor_name":"Pulmonary Disease, Chronic Obstructive","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D029424","descriptor_name":"Pulmonary Disease, Chronic Obstructive","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D029424","descriptor_name":"Pulmonary Disease, Chronic Obstructive","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1752-0509-5-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-38","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-38","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:21375767","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21375767","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:diposit.ub.edu:2445/100752","is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/100752","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Articles publicats en revistes (Medicina)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:repositori.upf.edu:10230/16456","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/16456","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3060864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3060864","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4774bc02-5eb3-4a95-9d9d-f07d19296efc","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/portal/en/publications/knowledge-management-for-systems-biology-a-general-and-visually-driven-framework-applied-to-translational-medicine(4774bc02-5eb3-4a95-9d9d-f07d19296efc).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Maier, D, Kalus, W, Wolff, M, Kalko, SG, Roca, J, Marin de Mas, I, Turan Jurdzinski, N, Cascante, M, Falciani, F, Hernandez, M, Villa-Freixa, J & Losko, S 2011, 'Knowledge management for systems biology a general and visually driven framework applied to translational medicine', BMC systems biology, vol. 5, pp. 38. https://doi.org/10.1186/1752-0509-5-38","raw_type":"article"},{"id":"pmh:oai:www.recercat.cat:2072/266407","is_oa":true,"landing_page_url":"http://hdl.handle.net/2445/100752","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-38","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-38","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1968363067.pdf","grobid_xml":"https://content.openalex.org/works/W1968363067.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W8759066","https://openalex.org/W588261718","https://openalex.org/W1509396824","https://openalex.org/W1509844421","https://openalex.org/W1533058169","https://openalex.org/W1582370027","https://openalex.org/W1603224403","https://openalex.org/W1730348256","https://openalex.org/W1933461282","https://openalex.org/W1963841093","https://openalex.org/W1969709265","https://openalex.org/W1970629860","https://openalex.org/W1971676632","https://openalex.org/W2013009523","https://openalex.org/W2042880070","https://openalex.org/W2059942711","https://openalex.org/W2063007776","https://openalex.org/W2075493966","https://openalex.org/W2075656203","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2108781775","https://openalex.org/W2120789186","https://openalex.org/W2125816119","https://openalex.org/W2128427913","https://openalex.org/W2131581981","https://openalex.org/W2136539307","https://openalex.org/W2137653635","https://openalex.org/W2141132558","https://openalex.org/W2145477956","https://openalex.org/W2145889895","https://openalex.org/W2149194035","https://openalex.org/W2150908245","https://openalex.org/W2153931449","https://openalex.org/W2154139219","https://openalex.org/W2155232871","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2159799774","https://openalex.org/W2160948978","https://openalex.org/W2165428180","https://openalex.org/W2165685472","https://openalex.org/W2187363965","https://openalex.org/W2340109002","https://openalex.org/W2471189955","https://openalex.org/W4213060373","https://openalex.org/W4234137470","https://openalex.org/W4240231372","https://openalex.org/W4245304821","https://openalex.org/W4285719527","https://openalex.org/W4320800138","https://openalex.org/W6606043256"],"related_works":["https://openalex.org/W2383984929","https://openalex.org/W2287688836","https://openalex.org/W2364239786","https://openalex.org/W3132560410","https://openalex.org/W2590643325","https://openalex.org/W2385332254","https://openalex.org/W1999344992","https://openalex.org/W3032627393","https://openalex.org/W2374368495","https://openalex.org/W2144708804"],"abstract_inverted_index":{"We":[0],"generate":[1],"the":[2,15,25,38,54],"first":[3],"semantically":[4],"integrated":[5],"COPD":[6],"specific":[7],"public":[8],"knowledge":[9,24,39],"base":[10,40],"and":[11,19,35,63,74,78],"find":[12],"that":[13],"for":[14,37,69],"integration":[16],"of":[17,56],"clinical":[18,87],"experimental":[20],"data":[21,65,71],"with":[22,92],"pre-existing":[23],"configuration":[26],"based":[27,95],"set-up":[28],"enabled":[29],"by":[30],"BioXM":[31],"reduced":[32],"implementation":[33],"time":[34],"effort":[36],"compared":[41],"to":[42],"similar":[43],"systems":[44],"implemented":[45],"as":[46],"classical":[47],"software":[48],"development":[49],"projects.":[50],"The":[51],"knowledgebase":[52],"enables":[53],"retrieval":[55],"sub-networks":[57],"including":[58],"protein-protein":[59],"interaction,":[60],"pathway,":[61],"gene--disease":[62],"gene--compound":[64],"which":[66,97],"are":[67],"used":[68],"subsequent":[70],"analysis,":[72],"modelling":[73],"simulation.":[75],"Pre-structured":[76],"queries":[77],"reports":[79],"enhance":[80],"usability;":[81],"establishing":[82],"their":[83],"use":[84],"in":[85],"everyday":[86],"settings":[88],"requires":[89],"further":[90],"simplification":[91],"a":[93],"browser":[94],"interface":[96],"is":[98],"currently":[99],"under":[100],"development.":[101]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
