{"id":"https://openalex.org/W2120599990","doi":"https://doi.org/10.1186/1752-0509-5-188","title":"PathCase-SB architecture and database design","display_name":"PathCase-SB architecture and database design","publication_year":2011,"publication_date":"2011-11-09","ids":{"openalex":"https://openalex.org/W2120599990","doi":"https://doi.org/10.1186/1752-0509-5-188","mag":"2120599990","pmid":"https://pubmed.ncbi.nlm.nih.gov/22070889"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-188","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-188","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-188","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-188","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035836413","display_name":"Ali Cakmak","orcid":"https://orcid.org/0000-0002-1382-6130"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ali Cakmak","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH 44106, USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100913092","display_name":"Xinjian Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinjian Qi","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034533391","display_name":"Sarp A Coskun","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarp A Coskun","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108833884","display_name":"Mitali Das","orcid":"https://orcid.org/0000-0002-4326-7878"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitali Das","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102955441","display_name":"En Cheng","orcid":"https://orcid.org/0000-0002-4777-2468"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"En Cheng","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090836372","display_name":"A. Erc\u00fcment \u00c7i\u00e7ek","orcid":"https://orcid.org/0000-0001-8613-6619"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A Ercument Cicek","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084661497","display_name":"Nicola Lai","orcid":"https://orcid.org/0000-0002-3436-289X"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicola Lai","raw_affiliation_strings":["Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016412404","display_name":"G\u00fcltekin \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gultekin Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013424429","display_name":"Z. Meral \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z Meral Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":1.0948,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.76205481,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"188","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12643","display_name":"Sustainability and Ecological Systems Analysis","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7805858850479126},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.61866295337677},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5977417826652527},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.5160672068595886},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5132641792297363},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.4753651022911072},{"id":"https://openalex.org/keywords/distributed-database","display_name":"Distributed database","score":0.41167595982551575},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34057193994522095},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32762378454208374},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12915945053100586}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7805858850479126},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.61866295337677},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5977417826652527},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.5160672068595886},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5132641792297363},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.4753651022911072},{"id":"https://openalex.org/C70061542","wikidata":"https://www.wikidata.org/wiki/Q989016","display_name":"Distributed database","level":2,"score":0.41167595982551575},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34057193994522095},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32762378454208374},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12915945053100586},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006019","descriptor_name":"Glycolysis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-5-188","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-188","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-188","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:22070889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22070889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2238208","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3229461","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unica.it:11584/278872","is_oa":true,"landing_page_url":"https://hdl.handle.net/11584/278872","pdf_url":null,"source":{"id":"https://openalex.org/S4377196293","display_name":"UNICA IRIS Institutional Research Information System (University of Cagliari)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172446870","host_organization_name":"University of Cagliari","host_organization_lineage":["https://openalex.org/I172446870"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-188","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-188","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-188","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G1245891105","display_name":null,"funder_award_id":"GM088823","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1846124065","display_name":null,"funder_award_id":"DBI 0849956","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4990787439","display_name":null,"funder_award_id":"CRI 0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5173077141","display_name":"Database-Enabled Tools for Regulatory Metabolic Networks","funder_award_id":"0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6727188481","display_name":"CRI: Infrastructure for Managing and Analyzing Large Scale Biological Data via Utility Computing","funder_award_id":"0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8557371565","display_name":null,"funder_award_id":"DBI 0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120599990.pdf","grobid_xml":"https://content.openalex.org/works/W2120599990.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1963683856","https://openalex.org/W1967326559","https://openalex.org/W1972793074","https://openalex.org/W2020561965","https://openalex.org/W2022015062","https://openalex.org/W2033377040","https://openalex.org/W2042880070","https://openalex.org/W2107062718","https://openalex.org/W2114124738","https://openalex.org/W2124236793","https://openalex.org/W2125904022","https://openalex.org/W2134221731","https://openalex.org/W2155967165","https://openalex.org/W2753599097","https://openalex.org/W2753710282","https://openalex.org/W4247153377"],"related_works":["https://openalex.org/W2389214306","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2757182831","https://openalex.org/W2095886385","https://openalex.org/W2366260417","https://openalex.org/W1994603456","https://openalex.org/W2067892434","https://openalex.org/W2386559299"],"abstract_inverted_index":{"BACKGROUND:":[0],"Integration":[1],"of":[2,40,110,121,167],"metabolic":[3,8,35,49],"pathways":[4],"resources":[5],"and":[6,11,24,51,54,62,66,78,85,91,102,132,134,152,160,162,170,175,181,186],"regulatory":[7,48],"network":[9],"models,":[10,53],"deploying":[12],"new":[13,140,144],"tools":[14,57,105],"on":[15,30,126],"the":[16,32,38,108,127,143,164,191,194,205],"integrated":[17],"platform":[18],"can":[19],"help":[20,59],"perform":[21],"more":[22,25,137],"effective":[23],"efficient":[26],"systems":[27],"biology":[28],"research":[29],"understanding":[31],"regulation":[33],"in":[34,157,193],"networks.":[36],"Therefore,":[37],"tasks":[39],"(a)":[41],"integrating":[42],"under":[43],"a":[44,99,178],"single":[45],"database":[46,82,131,153,176],"environment":[47,183],"networks":[50],"existing":[52],"(b)":[55],"building":[56],"to":[58,118,135,190],"with":[60,184],"modeling":[61],"analysis":[63],"are":[64],"desirable":[65],"intellectually":[67],"challenging":[68],"computational":[69,104],"tasks.":[70],"DESCRIPTION:":[71],"PathCase":[72],"Systems":[73],"Biology":[74],"(PathCase-SB)":[75],"is":[76,198],"built":[77],"released.":[79],"The":[80,94],"PathCase-SB":[81,96,116,173,196],"provides":[83,98],"data":[84,120,124,192],"API":[86],"for":[87,113],"multiple":[88],"user":[89],"interfaces":[90],"software":[92],"tools.":[93],"current":[95,165],"system":[97],"database-enabled":[100],"framework":[101],"web-based":[103,145],"towards":[106],"facilitating":[107],"development":[109],"kinetic":[111],"models":[112],"biological":[114,123],"systems.":[115],"aims":[117],"integrate":[119],"selected":[122],"sources":[125],"web":[128],"(currently,":[129],"BioModels":[130],"KEGG),":[133],"provide":[136,177],"powerful":[138],"and/or":[139],"capabilities":[141],"via":[142],"integrative":[146],"framework.":[147],"This":[148],"paper":[149],"describes":[150],"architecture":[151,169,174],"design":[154,159,166],"issues":[155],"encountered":[156],"PathCase-SB's":[158,168],"implementation,":[161],"presents":[163],"database.":[171,195],"CONCLUSIONS:":[172],"highly":[179],"extensible":[180],"scalable":[182],"easy":[185],"fast":[187],"(real-time)":[188],"access":[189],"itself":[197],"already":[199],"being":[200],"used":[201],"by":[202],"researchers":[203],"across":[204],"world.":[206]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
