{"id":"https://openalex.org/W2094424534","doi":"https://doi.org/10.1186/1752-0509-5-137","title":"Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models","display_name":"Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models","publication_year":2011,"publication_date":"2011-08-25","ids":{"openalex":"https://openalex.org/W2094424534","doi":"https://doi.org/10.1186/1752-0509-5-137","mag":"2094424534","pmid":"https://pubmed.ncbi.nlm.nih.gov/21867520"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-5-137","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-137","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-137","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-137","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067169508","display_name":"Carlos Pozo","orcid":"https://orcid.org/0000-0002-5645-674X"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Carlos Pozo","raw_affiliation_strings":["Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Spain","Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Spain","institution_ids":[]},{"raw_affiliation_string":"Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024866710","display_name":"Alberto Mar\u0131\u0301n-Sanguino","orcid":"https://orcid.org/0000-0001-8728-7689"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alberto Mar\u00edn-Sanguino","raw_affiliation_strings":["Technische Universit\u00e4t M\u00fcnchen. Fachgebiet f\u00fcr Systembiotechnologie, Boltzmannstr. 15, 85748, Garching, Germany","Technische Universit\u00e4t M\u00fcnchen Fachgebiet f\u00fcr Systembiotechnologie Garching Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technische Universit\u00e4t M\u00fcnchen. Fachgebiet f\u00fcr Systembiotechnologie, Boltzmannstr. 15, 85748, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technische Universit\u00e4t M\u00fcnchen Fachgebiet f\u00fcr Systembiotechnologie Garching Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020840486","display_name":"Rui Alves","orcid":"https://orcid.org/0000-0002-8112-5184"},"institutions":[{"id":"https://openalex.org/I4210133944","display_name":"Biomedical Research Institute of Lleida","ror":"https://ror.org/03mfyme49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210133944","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rui Alves","raw_affiliation_strings":["Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Montserrat Roig 2, 25008, Lleida, Spain","Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Montserrat Roig 2, 25008, Lleida, Spain","institution_ids":["https://openalex.org/I4210133944","https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I4210133944","https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059336153","display_name":"Gonzalo Guill\u00e9n\u2010Gos\u00e1lbez","orcid":"https://orcid.org/0000-0001-6074-8473"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gonzalo Guill\u00e9n-Gos\u00e1lbez","raw_affiliation_strings":["Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Avinguda Pa\u00efsos Catalans 26, 43007, Tarragona, Spain","Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Avinguda Pa\u00efsos Catalans 26, 43007, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]},{"raw_affiliation_string":"Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047186561","display_name":"Laureano Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-3186-7235"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laureano Jim\u00e9nez","raw_affiliation_strings":["Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Avinguda Pa\u00efsos Catalans 26, 43007, Tarragona, Spain","Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Avinguda Pa\u00efsos Catalans 26, 43007, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]},{"raw_affiliation_string":"Departament d'Enginyeria Qu\u00edmica, Universitat Rovira i Virgili, Tarragona, Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037021167","display_name":"Albert Sorribas","orcid":"https://orcid.org/0000-0002-7407-4075"},"institutions":[{"id":"https://openalex.org/I4210133944","display_name":"Biomedical Research Institute of Lleida","ror":"https://ror.org/03mfyme49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210133944","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Albert Sorribas","raw_affiliation_strings":["Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Montserrat Roig 2, 25008, Lleida, Spain","Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Montserrat Roig 2, 25008, Lleida, Spain","institution_ids":["https://openalex.org/I4210133944","https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament de Ci\u00e8ncies M\u00e8diques B\u00e0siques, Institut de Recerca Biom\u00e8dica de Lleida (IRBLLEIDA), Universitat de Lleida, Lleida, Spain","institution_ids":["https://openalex.org/I4210133944","https://openalex.org/I15766328"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067169508"],"corresponding_institution_ids":["https://openalex.org/I55952717"],"apc_list":null,"apc_paid":null,"fwci":1.9954,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.86411395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"137","last_page":"137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9384999871253967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9384999871253967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.020600000396370888,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5687917470932007},{"id":"https://openalex.org/keywords/steady-state","display_name":"Steady state (chemistry)","score":0.4877984821796417},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.4724096357822418},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46765774488449097},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.4346426725387573},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.39077574014663696},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2534980773925781},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2377791404724121},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23276320099830627},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1281488537788391},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11533871293067932},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.08344033360481262}],"concepts":[{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5687917470932007},{"id":"https://openalex.org/C8171440","wikidata":"https://www.wikidata.org/wiki/Q903414","display_name":"Steady state (chemistry)","level":2,"score":0.4877984821796417},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4724096357822418},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46765774488449097},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.4346426725387573},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.39077574014663696},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2534980773925781},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2377791404724121},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23276320099830627},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1281488537788391},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11533871293067932},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.08344033360481262},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000220","descriptor_name":"Adaptation, Biological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000220","descriptor_name":"Adaptation, Biological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000220","descriptor_name":"Adaptation, Biological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1752-0509-5-137","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-137","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-137","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:21867520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21867520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:dnet:raudl_______::2906c5e32713e3de34e76bf3c3d18282","is_oa":true,"landing_page_url":"http://hdl.handle.net/10459.1/45587","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2202532","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3201032","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1129680","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1129680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/432055","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/432055","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 5 (1)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000432055","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000432055","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-5-137","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-5-137","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-137","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4998278097","display_name":null,"funder_award_id":"2009SGR809","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G6190739589","display_name":null,"funder_award_id":"BFU2010-17704","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2094424534.pdf","grobid_xml":"https://content.openalex.org/works/W2094424534.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1482637285","https://openalex.org/W1484652103","https://openalex.org/W1496092928","https://openalex.org/W1501815954","https://openalex.org/W1502529406","https://openalex.org/W1510585142","https://openalex.org/W1523676066","https://openalex.org/W1562426977","https://openalex.org/W1581582023","https://openalex.org/W1585096463","https://openalex.org/W1592132377","https://openalex.org/W1595036009","https://openalex.org/W1946177469","https://openalex.org/W1965771049","https://openalex.org/W1979517072","https://openalex.org/W1982194390","https://openalex.org/W1982195171","https://openalex.org/W2000040887","https://openalex.org/W2002635898","https://openalex.org/W2013195029","https://openalex.org/W2018941609","https://openalex.org/W2020241931","https://openalex.org/W2025172803","https://openalex.org/W2029577886","https://openalex.org/W2030077105","https://openalex.org/W2032234281","https://openalex.org/W2039354115","https://openalex.org/W2041908405","https://openalex.org/W2047228180","https://openalex.org/W2053339983","https://openalex.org/W2054954256","https://openalex.org/W2090983022","https://openalex.org/W2091250743","https://openalex.org/W2094315987","https://openalex.org/W2097664794","https://openalex.org/W2103365780","https://openalex.org/W2104004040","https://openalex.org/W2127336071","https://openalex.org/W2128215351","https://openalex.org/W2128869726","https://openalex.org/W2129935828","https://openalex.org/W2150583791","https://openalex.org/W2156125169","https://openalex.org/W2156994733","https://openalex.org/W2160163735","https://openalex.org/W2161649718","https://openalex.org/W2162524546","https://openalex.org/W2163823651","https://openalex.org/W2169138639","https://openalex.org/W2170484057","https://openalex.org/W2182186306","https://openalex.org/W2312902607","https://openalex.org/W2545004184","https://openalex.org/W2615258659","https://openalex.org/W4302557773"],"related_works":["https://openalex.org/W1599920801","https://openalex.org/W2000404450","https://openalex.org/W3110061564","https://openalex.org/W2561946475","https://openalex.org/W2057769265","https://openalex.org/W2147252939","https://openalex.org/W2234368529","https://openalex.org/W1993871324","https://openalex.org/W2898285107","https://openalex.org/W3027061762"],"abstract_inverted_index":{"BACKGROUND:":[0],"Design":[1],"of":[2,16,38,117,144,151,162,209,251],"newly":[3],"engineered":[4],"microbial":[5],"strains":[6],"for":[7,20,120,147,205],"biotechnological":[8,61],"purposes":[9],"would":[10],"greatly":[11,189],"benefit":[12],"from":[13],"the":[14,21,34,45,53,59,97,115,126,149,160,177,192,197,221,252,258],"development":[15,35,116],"realistic":[17],"mathematical":[18,111],"models":[19,27,65,94,166,211,218,238,241],"processes":[22],"to":[23,49,52,57,66,104,196,224],"be":[24,30,50,182],"optimized.":[25],"Such":[26],"can":[28,181],"then":[29],"analyzed":[31],"and,":[32],"with":[33,226],"and":[36,74,141,191,215,228],"application":[37],"appropriate":[39,64,245],"optimization":[40,139,175,187,260],"techniques,":[41,87],"one":[42],"could":[43],"identify":[44],"modifications":[46],"that":[47,113,173,219,234,247,255],"need":[48],"made":[51],"organism":[54],"in":[55,133,154],"order":[56],"achieve":[58],"desired":[60],"goal.":[62],"As":[63],"perform":[67],"such":[68,88],"an":[69,168,244],"analysis":[70],"are":[71,194],"necessarily":[72],"non-linear":[73,165,199,210,236],"typically":[75],"non-convex,":[76],"finding":[77],"their":[78],"global":[79,121,174,259],"optimum":[80],"is":[81,188,203,242],"a":[82,101,110,136,142,206],"challenging":[83],"task.":[84,261],"Canonical":[85],"modeling":[86],"as":[89,213],"Generalized":[90],"Mass":[91],"Action":[92],"(GMA)":[93],"based":[95],"on":[96,125,176],"power-law":[98,222],"formalism,":[99],"offer":[100],"possible":[102],"solution":[103],"this":[105,185],"problem":[106],"because":[107],"they":[108],"have":[109,131],"structure":[112],"enables":[114],"specific":[118],"algorithms":[119],"optimization.":[122],"RESULTS:":[123],"Based":[124],"GMA":[127,170,179,240],"canonical":[128],"representation,":[129],"we":[130,158],"developed":[132],"previous":[134],"works":[135],"highly":[137],"efficient":[138],"algorithm":[140],"set":[143],"related":[145],"strategies":[146],"understanding":[148],"evolution":[150],"adaptive":[152],"responses":[153],"cellular":[155],"metabolism.":[156],"Here,":[157],"explore":[159],"possibility":[161],"recasting":[163,235],"kinetic":[164,237],"into":[167,239],"equivalent":[169],"model,":[171],"so":[172],"recast":[178],"model":[180],"performed.":[183],"With":[184],"technique,":[186],"facilitated":[190],"results":[193,232],"transposable":[195],"original":[198],"problem.":[200],"This":[201],"procedure":[202],"straightforward":[204],"particular":[207],"class":[208],"known":[212],"Saturable":[214],"Cooperative":[216],"(SC)":[217],"extend":[220],"formalism":[223],"deal":[225],"saturation":[227],"cooperativity.":[229],"CONCLUSIONS:":[230],"Our":[231],"show":[233],"indeed":[243],"strategy":[246],"helps":[248],"overcoming":[249],"some":[250],"numerical":[253],"difficulties":[254],"arise":[256],"during":[257]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
