{"id":"https://openalex.org/W2017986542","doi":"https://doi.org/10.1186/1752-0509-4-s1-s7","title":"A novel gene network inference algorithm using predictive minimum description length approach","display_name":"A novel gene network inference algorithm using predictive minimum description length approach","publication_year":2010,"publication_date":"2010-05-01","ids":{"openalex":"https://openalex.org/W2017986542","doi":"https://doi.org/10.1186/1752-0509-4-s1-s7","mag":"2017986542","pmid":"https://pubmed.ncbi.nlm.nih.gov/20522257"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-S1-S7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082760446","display_name":"Vijender Chaitankar","orcid":null},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vijender Chaitankar","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, MS 39402, USA. vchaitan@orca.st.usm.edu","School of Computing, Univ. of Southern Mississippi, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, MS 39402, USA. vchaitan@orca.st.usm.edu","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, Univ. of Southern Mississippi, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080886331","display_name":"Preetam Ghosh","orcid":"https://orcid.org/0000-0003-3880-5886"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Preetam Ghosh","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, MS, 39402, USA","School of Computing, Univ. of Southern Mississippi, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, MS, 39402, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, Univ. of Southern Mississippi, USA","institution_ids":["https://openalex.org/I44854399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I4210088792","display_name":"United States Army","ror":"https://ror.org/00afsp483","country_code":"US","type":"government","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1330347796","https://openalex.org/I4210088792"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J Perkins","raw_affiliation_strings":["Environmental Laboratory, U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","Environmental Laboratory, U. S. Army Engineer Research and Development Center, Vicksburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Laboratory, U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","institution_ids":["https://openalex.org/I4210088792","https://openalex.org/I87303767"]},{"raw_affiliation_string":"Environmental Laboratory, U. S. Army Engineer Research and Development Center, Vicksburg, USA","institution_ids":["https://openalex.org/I87303767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019029265","display_name":"Ping Gong","orcid":"https://orcid.org/0000-0001-9910-7948"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ping Gong","raw_affiliation_strings":["SpecPro Inc., 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","SpecPro Inc., Vicksburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SpecPro Inc., 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","institution_ids":[]},{"raw_affiliation_string":"SpecPro Inc., Vicksburg, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042435594","display_name":"Youping Deng","orcid":"https://orcid.org/0000-0002-5951-8213"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Youping Deng","raw_affiliation_strings":["SpecPro Inc., 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","SpecPro Inc., Vicksburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SpecPro Inc., 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA","institution_ids":[]},{"raw_affiliation_string":"SpecPro Inc., Vicksburg, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100603445","display_name":"Chaoyang Zhang","orcid":"https://orcid.org/0000-0002-1221-0406"},"institutions":[{"id":"https://openalex.org/I44854399","display_name":"University of Southern Mississippi","ror":"https://ror.org/0270vfa57","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I44854399"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chaoyang Zhang","raw_affiliation_strings":["School of Computing, University of Southern Mississippi, MS, 39402, USA","School of Computing, Univ. of Southern Mississippi, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, University of Southern Mississippi, MS, 39402, USA","institution_ids":["https://openalex.org/I44854399"]},{"raw_affiliation_string":"School of Computing, Univ. of Southern Mississippi, USA","institution_ids":["https://openalex.org/I44854399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080886331","https://openalex.org/A5082760446","https://openalex.org/A5100603445"],"corresponding_institution_ids":["https://openalex.org/I44854399"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.4891,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.89121904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"4","issue":"S1","first_page":"S7","last_page":"S7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9282000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9282000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.028200000524520874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.02810000069439411,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/minimum-description-length","display_name":"Minimum description length","score":0.739066481590271},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6937945485115051},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6426256895065308},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5931110978126526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5906196236610413},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.542980432510376},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.526610255241394},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.5000617504119873},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4274725914001465},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4164700508117676},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4157012701034546},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26221776008605957},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.130918949842453},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13011100888252258}],"concepts":[{"id":"https://openalex.org/C87465248","wikidata":"https://www.wikidata.org/wiki/Q1417790","display_name":"Minimum description length","level":2,"score":0.739066481590271},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6937945485115051},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6426256895065308},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5931110978126526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5906196236610413},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.542980432510376},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.526610255241394},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.5000617504119873},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4274725914001465},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4164700508117676},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4157012701034546},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26221776008605957},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.130918949842453},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13011100888252258},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-4-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:20522257","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20522257","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:aquila.usm.edu:fac_pubs-1929","is_oa":false,"landing_page_url":"https://aquila.usm.edu/fac_pubs/930","pdf_url":null,"source":{"id":"https://openalex.org/S4306402529","display_name":"Aquila Digital Community (University of Southern Mississippi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44854399","host_organization_name":"University of Southern Mississippi","host_organization_lineage":["https://openalex.org/I44854399"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2880413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2880413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-s1-s7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-s1-s7","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-S1-S7","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2512333561","display_name":null,"funder_award_id":"0903787","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G6805318589","display_name":"Modeling and Simulation of Complex Systems","funder_award_id":"0903787","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337538","display_name":"U.S. Army Corps of Engineers","ror":"https://ror.org/05w4e8v21"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2017986542.pdf","grobid_xml":"https://content.openalex.org/works/W2017986542.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W89551800","https://openalex.org/W569276703","https://openalex.org/W1481919380","https://openalex.org/W1541161193","https://openalex.org/W1573613494","https://openalex.org/W1963522244","https://openalex.org/W1971224531","https://openalex.org/W1973217014","https://openalex.org/W1984196434","https://openalex.org/W2000689241","https://openalex.org/W2040575507","https://openalex.org/W2054658115","https://openalex.org/W2063389953","https://openalex.org/W2082982706","https://openalex.org/W2098025145","https://openalex.org/W2099111195","https://openalex.org/W2103453943","https://openalex.org/W2123060905","https://openalex.org/W2130721915","https://openalex.org/W2132119275","https://openalex.org/W2154454113","https://openalex.org/W2159482845","https://openalex.org/W2160533336","https://openalex.org/W2163296115","https://openalex.org/W2165674132","https://openalex.org/W2170112109","https://openalex.org/W2796293253","https://openalex.org/W3099289621","https://openalex.org/W4236636569","https://openalex.org/W4245929783","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W4298831272","https://openalex.org/W2489956408","https://openalex.org/W2037989911","https://openalex.org/W349256592","https://openalex.org/W2086694237","https://openalex.org/W4213307346","https://openalex.org/W2068210614","https://openalex.org/W2130372067","https://openalex.org/W2100540162","https://openalex.org/W2953034154"],"abstract_inverted_index":{"BACKGROUND:":[0],"Reverse":[1],"engineering":[2],"of":[3,24,29,65,72,168,177,240,248,277,312,322,341,349],"gene":[4,130,264,313],"regulatory":[5,45,131,149,265,314],"networks":[6,132,266],"using":[7,183],"information":[8,34,115,119,141],"theory":[9,35],"models":[10,36],"has":[11,55,331],"received":[12],"much":[13],"attention":[14],"due":[15],"to":[16,38,58,98,128,159,231],"its":[17],"simplicity,":[18],"low":[19],"computational":[20],"cost,":[21],"and":[22,75,91,121,145,153,190,206,224,289,306],"capability":[23],"inferring":[25,263],"large":[26],"networks.":[27],"One":[28],"the":[30,40,44,66,70,100,140,148,154,161,166,178,198,217,227,232,238,241,259,275,296,303,307,319,339,342],"major":[31],"problems":[32],"with":[33],"is":[37,69,84,96,299],"determine":[39,147,160],"threshold":[41,164,305,329,348],"which":[42,112],"defines":[43],"relationships":[46,150],"between":[47,89,151],"genes.":[48],"The":[49,62,175,202,213,282],"minimum":[50,123],"description":[51,63,124],"length":[52,64,74,125],"(MDL)":[53],"principle":[54,68,127,156,261,298],"been":[56,332],"implemented":[57],"overcome":[59],"this":[60,104,138],"problem.":[61],"MDL":[67],"sum":[71],"model":[73,90],"data":[76,92,188,195,272,292,350],"encoding":[77],"length.":[78],"A":[79],"user-specified":[80,170],"fine":[81,171,279],"tuning":[82,172,280],"parameter":[83],"used":[85,209],"as":[86,210,229],"control":[87],"mechanism":[88],"encoding,":[93],"but":[94],"it":[95,335],"difficult":[97],"find":[99],"optimal":[101,327],"parameter.":[102,173,281],"In":[103,137],"work,":[105],"we":[106],"proposed":[107,179,218,253],"a":[108,169,191,254,278,346],"new":[109,255],"inference":[110],"algorithm":[111,180,219,256,309],"incorporated":[113],"mutual":[114,118],"(MI),":[116],"conditional":[117],"(CMI)":[120],"predictive":[122],"(PMDL)":[126],"infer":[129],"from":[133,267,286],"DNA":[134,270],"microarray":[135,271],"data.":[136,249],"algorithm,":[139],"theoretic":[142],"quantities":[143,204],"MI":[144,163,304],"CMI":[146,328],"genes":[152],"PMDL":[155,260,297],"method":[157],"attempts":[158],"best":[162],"without":[165],"need":[167,276],"RESULTS:":[174],"performance":[176,211,239,340],"was":[181,243,336],"evaluated":[182],"both":[184,287],"synthetic":[185,288],"time":[186,193,268],"series":[187,194,269],"sets":[189,293],"biological":[192,291],"set":[196],"for":[197,262],"yeast":[199],"Saccharomyces":[200],"cerevisiae.":[201],"benchmark":[203],"precision":[205,311],"recall":[207],"were":[208],"measures.":[212],"results":[214,284],"show":[215,294],"that":[216,257,273,295,338],"produced":[220],"less":[221],"false":[222],"edges":[223],"significantly":[225],"improved":[226],"precision,":[228],"compared":[230],"existing":[233],"algorithm.":[234],"For":[235],"further":[236],"analysis":[237,321],"algorithms":[242,343],"observed":[244,337],"over":[245],"different":[246],"sizes":[247],"CONCLUSIONS:":[250],"We":[251],"have":[252],"implements":[258],"eliminates":[274],"evaluation":[283],"obtained":[285],"actual":[290],"effective":[300],"in":[301],"determining":[302],"developed":[308],"improves":[310],"network":[315],"inference.":[316],"Based":[317],"on":[318],"sensitivity":[320],"all":[323],"tested":[324],"cases,":[325],"an":[326],"value":[330],"identified.":[333],"Finally":[334],"saturates":[344],"at":[345],"certain":[347],"size.":[351]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":10}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
