{"id":"https://openalex.org/W2158879675","doi":"https://doi.org/10.1186/1752-0509-4-96","title":"Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks","display_name":"Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks","publication_year":2010,"publication_date":"2010-07-15","ids":{"openalex":"https://openalex.org/W2158879675","doi":"https://doi.org/10.1186/1752-0509-4-96","mag":"2158879675","pmid":"https://pubmed.ncbi.nlm.nih.gov/20633292"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-96","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019679682","display_name":"David van Dijk","orcid":"https://orcid.org/0000-0003-3911-9925"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]},{"id":"https://openalex.org/I55106644","display_name":"Amsterdam University of Applied Sciences","ror":"https://ror.org/00y2z2s03","country_code":"NL","type":"education","lineage":["https://openalex.org/I55106644"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"David van Dijk","raw_affiliation_strings":["Computational Science, University of Amsterdam, Sciencepark 107, 1098 XG Amsterdam, The Netherlands. d.vandijk@uva.nl","Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Sciencepark 107, 1098 XG Amsterdam, The Netherlands. d.vandijk@uva.nl","institution_ids":["https://openalex.org/I55106644"]},{"raw_affiliation_string":"Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082614669","display_name":"G\u00f6khan Ertaylan","orcid":"https://orcid.org/0000-0001-5602-6435"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gokhan Ertaylan","raw_affiliation_strings":["Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103011545","display_name":"Charles A. Boucher","orcid":"https://orcid.org/0000-0003-0892-5473"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Charles AB Boucher","raw_affiliation_strings":["Department of Virology, Erasmus Medical Center, 's-Gravendijkwal 230, 3015, Rotterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Virology, Erasmus Medical Center, 's-Gravendijkwal 230, 3015, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I913958620"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016657852","display_name":"P.M.A. Sloot","orcid":"https://orcid.org/0000-0002-3848-5395"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter MA Sloot","raw_affiliation_strings":["Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Computational Science, University of Amsterdam, Sciencepark 107, 1098, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5019679682"],"corresponding_institution_ids":["https://openalex.org/I55106644","https://openalex.org/I887064364"],"apc_list":null,"apc_paid":null,"fwci":2.5753,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.89817877,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"4","issue":"1","first_page":"96","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6459751129150391},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.6072745323181152},{"id":"https://openalex.org/keywords/viral-life-cycle","display_name":"Viral life cycle","score":0.5930668711662292},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.586833655834198},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5362327098846436},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5332353115081787},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.4938569664955139},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.4602031409740448},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4409812390804291},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.37809062004089355},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33254364132881165},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.25777292251586914},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20178526639938354}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6459751129150391},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.6072745323181152},{"id":"https://openalex.org/C25897203","wikidata":"https://www.wikidata.org/wiki/Q3241872","display_name":"Viral life cycle","level":4,"score":0.5930668711662292},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.586833655834198},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5362327098846436},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5332353115081787},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.4938569664955139},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.4602031409740448},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4409812390804291},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.37809062004089355},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33254364132881165},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.25777292251586914},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20178526639938354},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":13,"locations":[{"id":"doi:10.1186/1752-0509-4-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:20633292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20633292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/4f9f577c-8a4b-4b00-b0b1-581ba16a45c1","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/identifying-potential-survival-strategies-of-hiv1-through-virushost-protein-interaction-networks(4f9f577c-8a4b-4b00-b0b1-581ba16a45c1).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"van Dijk, D, Ertaylan, G, Boucher, C A B & Sloot, P M A 2010, 'Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks', BMC Systems Biology, vol. 4, pp. 96. https://doi.org/10.1186/1752-0509-4-96","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/4f9f577c-8a4b-4b00-b0b1-581ba16a45c1","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/identifying-potential-survival-strategies-of-hiv1-through-virushost-protein-interaction-networks(4f9f577c-8a4b-4b00-b0b1-581ba16a45c1).html","pdf_url":"https://pure.uva.nl/ws/files/936147/83643_327690.pdf","source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"van Dijk, D, Ertaylan, G, Boucher, C A B & Sloot, P M A 2010, 'Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks', BMC Systems Biology, vol. 4, pp. 96. https://doi.org/10.1186/1752-0509-4-96","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:eur:oai:pure.eur.nl:publications/16f3ed07-803f-4a57-9078-3511776e085b","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/16f3ed07-803f-4a57-9078-3511776e085b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 4. BioMed Central Ltd.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:eur:oai:repub.eur.nl:21108","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/21108","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Systems Biology, 4","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:publications/4f9f577c-8a4b-4b00-b0b1-581ba16a45c1","is_oa":false,"landing_page_url":"http://dare.uva.nl/personal/pure/en/publications/identifying-potential-survival-strategies-of-hiv1-through-virushost-protein-interaction-networks(4f9f577c-8a4b-4b00-b0b1-581ba16a45c1).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:dr.ntu.edu.sg:10356/84479","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/84479","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:orbilu.uni.lu:10993/16442","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/16442","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 15, 1-2. Biomed Central (2010).","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2913931","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2913931","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:pure.eur.nl:publications/16f3ed07-803f-4a57-9078-3511776e085b","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:repub.eur.nl:21108","is_oa":false,"landing_page_url":"https://repub.eur.nl/pub/21108","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Systems Biology vol. 4","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:um:oai:cris.maastrichtuniversity.nl:publications/a579c4c2-5fa9-4c7b-a4fe-d6d94f80f9ca","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/a579c4c2-5fa9-4c7b-a4fe-d6d94f80f9ca","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 4. BioMed Central Ltd","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-96","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-96","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-96","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4577958523","display_name":"Computing Real-World Phenomena with Dynamically Changing Complex Networks","funder_award_id":"233847","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158879675.pdf","grobid_xml":"https://content.openalex.org/works/W2158879675.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1510100072","https://openalex.org/W1966546784","https://openalex.org/W1967617815","https://openalex.org/W1969704393","https://openalex.org/W1973081915","https://openalex.org/W1982168843","https://openalex.org/W1982300822","https://openalex.org/W1989895971","https://openalex.org/W1989921625","https://openalex.org/W2001430278","https://openalex.org/W2008620264","https://openalex.org/W2016743875","https://openalex.org/W2019471862","https://openalex.org/W2020617313","https://openalex.org/W2022495336","https://openalex.org/W2026417691","https://openalex.org/W2027072124","https://openalex.org/W2031407766","https://openalex.org/W2033687160","https://openalex.org/W2033784609","https://openalex.org/W2053954543","https://openalex.org/W2054595210","https://openalex.org/W2056944867","https://openalex.org/W2058077802","https://openalex.org/W2060436323","https://openalex.org/W2060924905","https://openalex.org/W2061425021","https://openalex.org/W2062851353","https://openalex.org/W2068880841","https://openalex.org/W2081236313","https://openalex.org/W2083034544","https://openalex.org/W2083501474","https://openalex.org/W2087194317","https://openalex.org/W2098045561","https://openalex.org/W2107551331","https://openalex.org/W2110699703","https://openalex.org/W2112262143","https://openalex.org/W2122863289","https://openalex.org/W2126346789","https://openalex.org/W2130760539","https://openalex.org/W2131858707","https://openalex.org/W2135858941","https://openalex.org/W2139119391","https://openalex.org/W2142793137","https://openalex.org/W2144636447","https://openalex.org/W2145848202","https://openalex.org/W2147824439","https://openalex.org/W2148606196","https://openalex.org/W2149232113","https://openalex.org/W2150318080","https://openalex.org/W2153624566","https://openalex.org/W2158217645","https://openalex.org/W2159675211","https://openalex.org/W2161604082","https://openalex.org/W2162339867","https://openalex.org/W2163480486","https://openalex.org/W2166235318","https://openalex.org/W2171707538","https://openalex.org/W2582743722","https://openalex.org/W2917431650","https://openalex.org/W4285719527","https://openalex.org/W4313305938"],"related_works":["https://openalex.org/W2769306272","https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W376580281","https://openalex.org/W3203526752","https://openalex.org/W2066232588","https://openalex.org/W4377086792","https://openalex.org/W4312467679","https://openalex.org/W2099913238","https://openalex.org/W2767490506"],"abstract_inverted_index":{"HIV":[0],"infection":[1],"results":[2],"in":[3,13,40],"a":[4,41],"reprioritization":[5],"of":[6,17,29,33],"cellular":[7,64],"processes":[8],"reflected":[9],"by":[10,70],"an":[11],"increase":[12],"the":[14,27,63,67],"relative":[15],"importance":[16],"transcriptional":[18],"machinery":[19],"and":[20,55,76],"proteasome":[21],"formation.":[22],"We":[23],"conclude":[24],"that":[25],"during":[26],"evolution":[28],"HIV,":[30],"some":[31],"patterns":[32,68],"interaction":[34],"have":[35],"been":[36],"selected":[37],"for":[38,52,59],"resulting":[39],"system":[42],"where":[43],"virus":[44,75],"proteins":[45,51,58],"preferably":[46],"interact":[47,78],"with":[48,56,79],"central":[49],"human":[50],"direct":[53],"control":[54,61],"proteasomal":[57],"indirect":[60],"over":[62],"processes.":[65],"Finally,":[66],"described":[69],"network":[71],"motifs":[72],"illustrate":[73],"how":[74],"host":[77],"one":[80],"another.":[81]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
