{"id":"https://openalex.org/W2024772626","doi":"https://doi.org/10.1186/1752-0509-4-22","title":"So what do we really mean when we say that systems biology is holistic?","display_name":"So what do we really mean when we say that systems biology is holistic?","publication_year":2010,"publication_date":"2010-03-12","ids":{"openalex":"https://openalex.org/W2024772626","doi":"https://doi.org/10.1186/1752-0509-4-22","mag":"2024772626","pmid":"https://pubmed.ncbi.nlm.nih.gov/20226033"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-22","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-22","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-22","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022405565","display_name":"Derek Gatherer","orcid":"https://orcid.org/0000-0002-7385-5734"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Derek Gatherer","raw_affiliation_strings":["MRC Virology Unit, Institute of Virology, University of Glasgow, Church Street, Glasgow G11 5JR, UK. d.gatherer@mrcvu.gla.ac.uk","MRC Virology Unit, Institute of Virology, University of Glasgow, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"MRC Virology Unit, Institute of Virology, University of Glasgow, Church Street, Glasgow G11 5JR, UK. d.gatherer@mrcvu.gla.ac.uk","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"MRC Virology Unit, Institute of Virology, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022405565"],"corresponding_institution_ids":["https://openalex.org/I7882870"],"apc_list":null,"apc_paid":null,"fwci":2.8462,"has_fulltext":true,"cited_by_count":82,"citation_normalized_percentile":{"value":0.9070357,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10778","display_name":"Philosophy and History of Science","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reductionism","display_name":"Reductionism","score":0.9850395321846008},{"id":"https://openalex.org/keywords/holism","display_name":"Holism","score":0.9419244527816772},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.7202345132827759},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.655538022518158},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5811092853546143},{"id":"https://openalex.org/keywords/philosophy-of-biology","display_name":"Philosophy of biology","score":0.5254769921302795},{"id":"https://openalex.org/keywords/philosophy-of-science","display_name":"Philosophy of science","score":0.52541184425354},{"id":"https://openalex.org/keywords/mathematical-and-theoretical-biology","display_name":"Mathematical and theoretical biology","score":0.4691806137561798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39770379662513733},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.2975391149520874},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.15503698587417603},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.11599153280258179}],"concepts":[{"id":"https://openalex.org/C173366509","wikidata":"https://www.wikidata.org/wiki/Q206829","display_name":"Reductionism","level":2,"score":0.9850395321846008},{"id":"https://openalex.org/C20155586","wikidata":"https://www.wikidata.org/wiki/Q192891","display_name":"Holism","level":2,"score":0.9419244527816772},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.7202345132827759},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.655538022518158},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5811092853546143},{"id":"https://openalex.org/C180182882","wikidata":"https://www.wikidata.org/wiki/Q1028964","display_name":"Philosophy of biology","level":3,"score":0.5254769921302795},{"id":"https://openalex.org/C110099512","wikidata":"https://www.wikidata.org/wiki/Q59115","display_name":"Philosophy of science","level":2,"score":0.52541184425354},{"id":"https://openalex.org/C20129857","wikidata":"https://www.wikidata.org/wiki/Q751611","display_name":"Mathematical and theoretical biology","level":2,"score":0.4691806137561798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39770379662513733},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.2975391149520874},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.15503698587417603},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11599153280258179},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010684","descriptor_name":"Philosophy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010684","descriptor_name":"Philosophy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010684","descriptor_name":"Philosophy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010684","descriptor_name":"Philosophy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-4-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-22","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-22","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:20226033","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20226033","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:eprints.lancs.ac.uk:66857","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.lancs.ac.uk/id/eprint/66857/1/1752_0509_4_22.pdf","source":{"id":"https://openalex.org/S4306401916","display_name":"Lancaster EPrints (Lancaster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67415387","host_organization_name":"Lancaster University","host_organization_lineage":["https://openalex.org/I67415387"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:4b7208afe5fc462594533398edbb977c","is_oa":true,"landing_page_url":"https://doaj.org/article/4b7208afe5fc462594533398edbb977c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 4, Iss 1, p 22 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2850881","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2850881","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-22","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-22","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2024772626.pdf","grobid_xml":"https://content.openalex.org/works/W2024772626.grobid-xml"},"referenced_works_count":126,"referenced_works":["https://openalex.org/W20946878","https://openalex.org/W177895317","https://openalex.org/W181665514","https://openalex.org/W220745966","https://openalex.org/W297647190","https://openalex.org/W579940696","https://openalex.org/W580754085","https://openalex.org/W587240861","https://openalex.org/W607431881","https://openalex.org/W611178974","https://openalex.org/W621030130","https://openalex.org/W643863419","https://openalex.org/W932590258","https://openalex.org/W1483416975","https://openalex.org/W1490554448","https://openalex.org/W1490627244","https://openalex.org/W1491484635","https://openalex.org/W1492656484","https://openalex.org/W1496243522","https://openalex.org/W1497119524","https://openalex.org/W1502826531","https://openalex.org/W1513316261","https://openalex.org/W1515814298","https://openalex.org/W1529898704","https://openalex.org/W1537193471","https://openalex.org/W1559498400","https://openalex.org/W1560397140","https://openalex.org/W1561105122","https://openalex.org/W1568473488","https://openalex.org/W1569025383","https://openalex.org/W1576509321","https://openalex.org/W1589854289","https://openalex.org/W1595384240","https://openalex.org/W1597147275","https://openalex.org/W1615222761","https://openalex.org/W1627207668","https://openalex.org/W1673742847","https://openalex.org/W1940278121","https://openalex.org/W1969740852","https://openalex.org/W1972119137","https://openalex.org/W1977062359","https://openalex.org/W1977209720","https://openalex.org/W1979349022","https://openalex.org/W1979643333","https://openalex.org/W1991087190","https://openalex.org/W1999458575","https://openalex.org/W1999826180","https://openalex.org/W2004898377","https://openalex.org/W2005837979","https://openalex.org/W2006315372","https://openalex.org/W2011618123","https://openalex.org/W2011779395","https://openalex.org/W2020492528","https://openalex.org/W2022619825","https://openalex.org/W2024542998","https://openalex.org/W2025237642","https://openalex.org/W2027358895","https://openalex.org/W2028995721","https://openalex.org/W2040294125","https://openalex.org/W2042581186","https://openalex.org/W2044704902","https://openalex.org/W2046854548","https://openalex.org/W2049494217","https://openalex.org/W2051076997","https://openalex.org/W2054323719","https://openalex.org/W2056201302","https://openalex.org/W2057395583","https://openalex.org/W2064515627","https://openalex.org/W2064740951","https://openalex.org/W2067253382","https://openalex.org/W2070620717","https://openalex.org/W2072920241","https://openalex.org/W2076363936","https://openalex.org/W2079926987","https://openalex.org/W2081161173","https://openalex.org/W2083496215","https://openalex.org/W2085235979","https://openalex.org/W2093768395","https://openalex.org/W2106041424","https://openalex.org/W2110346448","https://openalex.org/W2114062032","https://openalex.org/W2135308053","https://openalex.org/W2135896045","https://openalex.org/W2136202599","https://openalex.org/W2138474288","https://openalex.org/W2139728951","https://openalex.org/W2140517953","https://openalex.org/W2142340920","https://openalex.org/W2145024737","https://openalex.org/W2146063014","https://openalex.org/W2147125291","https://openalex.org/W2150281203","https://openalex.org/W2158388529","https://openalex.org/W2161004887","https://openalex.org/W2166759412","https://openalex.org/W2169558102","https://openalex.org/W2171001867","https://openalex.org/W2172110387","https://openalex.org/W2243410218","https://openalex.org/W2279555996","https://openalex.org/W2312426245","https://openalex.org/W2314677735","https://openalex.org/W2316663026","https://openalex.org/W2327686960","https://openalex.org/W2405260561","https://openalex.org/W2506883151","https://openalex.org/W2579553565","https://openalex.org/W2586324757","https://openalex.org/W2611757178","https://openalex.org/W2753533763","https://openalex.org/W2944782266","https://openalex.org/W3003490010","https://openalex.org/W3127766173","https://openalex.org/W3133768423","https://openalex.org/W3146647032","https://openalex.org/W3159104302","https://openalex.org/W3203992401","https://openalex.org/W4206393857","https://openalex.org/W4230425158","https://openalex.org/W4230896293","https://openalex.org/W4231992040","https://openalex.org/W4247932443","https://openalex.org/W4256259619","https://openalex.org/W4300417742","https://openalex.org/W4319588526","https://openalex.org/W4388212499"],"related_works":["https://openalex.org/W3104685125","https://openalex.org/W2405391029","https://openalex.org/W103108251","https://openalex.org/W2028860426","https://openalex.org/W1534100873","https://openalex.org/W2041266162","https://openalex.org/W3119451211","https://openalex.org/W2024772626","https://openalex.org/W2989771205","https://openalex.org/W2165148202"],"abstract_inverted_index":{"Engaging":[0],"more":[1],"deeply":[2],"with":[3,22],"these":[4],"issues":[5],"should":[6],"sharpen":[7],"our":[8],"ideas":[9],"concerning":[10],"the":[11,27],"philosophy":[12],"of":[13,29],"systems":[14],"biology":[15],"and":[16],"its":[17],"future":[18],"best":[19],"methodology.":[20],"As":[21],"previous":[23],"decisive":[24],"moments":[25],"in":[26],"history":[28],"biology,":[30],"only":[31],"those":[32],"theories":[33],"that":[34],"immediately":[35],"suggest":[36],"relatively":[37],"easy":[38],"experiments":[39],"will":[40],"be":[41],"winners.":[42]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
