{"id":"https://openalex.org/W2141577802","doi":"https://doi.org/10.1186/1752-0509-4-180","title":"Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana","display_name":"Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2141577802","doi":"https://doi.org/10.1186/1752-0509-4-180","mag":"2141577802","pmid":"https://pubmed.ncbi.nlm.nih.gov/21194434"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-180","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-180","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-180","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-180","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085991817","display_name":"Ana-Roxana Pop","orcid":"https://orcid.org/0000-0003-3482-2734"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ana Pop","raw_affiliation_strings":["Computer Science Department, Princeton University, Princeton, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008844345","display_name":"Curtis Huttenhower","orcid":"https://orcid.org/0000-0002-1110-0096"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curtis Huttenhower","raw_affiliation_strings":["Biostatistics Department, Harvard School of Public Health, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biostatistics Department, Harvard School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034990134","display_name":"Anjali S. Iyer\u2010Pascuzzi","orcid":"https://orcid.org/0000-0001-5356-4350"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anjali Iyer-Pascuzzi","raw_affiliation_strings":["Department of Biology and Center for Systems Biology, Duke University, Durham, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Center for Systems Biology, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039989537","display_name":"Philip N. Benfey","orcid":"https://orcid.org/0000-0001-5302-758X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip N Benfey","raw_affiliation_strings":["Department of Biology and Center for Systems Biology, Duke University, Durham, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Center for Systems Biology, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025250742","display_name":"Olga G. Troyanskaya","orcid":"https://orcid.org/0000-0002-5676-5737"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga G Troyanskaya","raw_affiliation_strings":["Computer Science Department, Princeton University, Princeton, NJ, USA","Lewis-Sigler Institute for Integrative Genomics, Princeton University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5085991817"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":null,"apc_paid":null,"fwci":1.3609,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.80306353,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"4","issue":"1","first_page":"180","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9305999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9305999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.013500000350177288,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.7331780791282654},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6787585616111755},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6493475437164307},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.6325187087059021},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6225274801254272},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6149379014968872},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5924013257026672},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5632146596908569},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.4849093556404114},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48028895258903503},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.42777299880981445},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21326947212219238},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19916680455207825},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1617586314678192}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7331780791282654},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6787585616111755},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6493475437164307},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.6325187087059021},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6225274801254272},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6149379014968872},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5924013257026672},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5632146596908569},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.4849093556404114},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48028895258903503},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.42777299880981445},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21326947212219238},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19916680455207825},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1617586314678192},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-4-180","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-180","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-180","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:21194434","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21194434","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/8620907","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:8620907","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:c6dc2d1964f5488ebf27a3c5e55b02c1","is_oa":false,"landing_page_url":"https://doaj.org/article/c6dc2d1964f5488ebf27a3c5e55b02c1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 4, Iss 1, p 180 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3023688","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3023688","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-180","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-180","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-180","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1011064577","display_name":null,"funder_award_id":"P50 GM071508","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2271306371","display_name":null,"funder_award_id":"GM071508","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2994491871","display_name":null,"funder_award_id":"GM071508","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5288662233","display_name":null,"funder_award_id":"GM071966","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5910422865","display_name":null,"funder_award_id":"P50 GM071508","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7105370156","display_name":null,"funder_award_id":"R01 GM071966","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7588032409","display_name":"CAREER: An Integrated Approach to the Study of Biological Process Specific Networks","funder_award_id":"0546275","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7844601725","display_name":null,"funder_award_id":"GM071966","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7928206049","display_name":null,"funder_award_id":"T32 HG003284","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141577802.pdf","grobid_xml":"https://content.openalex.org/works/W2141577802.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W260963803","https://openalex.org/W1491036646","https://openalex.org/W1494075612","https://openalex.org/W1964061865","https://openalex.org/W1972633502","https://openalex.org/W1979590043","https://openalex.org/W1984056605","https://openalex.org/W2017098774","https://openalex.org/W2018186094","https://openalex.org/W2022619265","https://openalex.org/W2031199055","https://openalex.org/W2032843351","https://openalex.org/W2043821463","https://openalex.org/W2064773100","https://openalex.org/W2095956310","https://openalex.org/W2097042236","https://openalex.org/W2097311303","https://openalex.org/W2101674614","https://openalex.org/W2103017472","https://openalex.org/W2106122508","https://openalex.org/W2107491970","https://openalex.org/W2114197574","https://openalex.org/W2116896868","https://openalex.org/W2119043225","https://openalex.org/W2120295433","https://openalex.org/W2120743568","https://openalex.org/W2123385229","https://openalex.org/W2134097966","https://openalex.org/W2134873429","https://openalex.org/W2138340439","https://openalex.org/W2141119750","https://openalex.org/W2141885858","https://openalex.org/W2146526817","https://openalex.org/W2150646520","https://openalex.org/W2152360905","https://openalex.org/W2152896172","https://openalex.org/W2154540205","https://openalex.org/W2156091491","https://openalex.org/W2157727146","https://openalex.org/W2163485494","https://openalex.org/W2168546553","https://openalex.org/W4210623056","https://openalex.org/W4241639017"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W4386628104","https://openalex.org/W78967844","https://openalex.org/W2761746945","https://openalex.org/W3213185671","https://openalex.org/W413924837","https://openalex.org/W4206945140","https://openalex.org/W2509687359","https://openalex.org/W4212865750","https://openalex.org/W2092868481"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"years":[2],"have":[3,25],"seen":[4],"an":[5,35,94],"explosion":[6],"in":[7,14,108,132,144,177],"plant":[8,47,175],"genomics,":[9],"as":[10],"the":[11,39,102,133],"difficulties":[12],"inherent":[13],"sequencing":[15],"and":[16,21,72,75,84,111,116,150,174],"functionally":[17],"analyzing":[18],"these":[19],"biologically":[20],"economically":[22],"significant":[23],"organisms":[24],"been":[26],"overcome.":[27],"Arabidopsis":[28,61],"thaliana,":[29],"a":[30,54,118,167],"versatile":[31],"model":[32],"organism,":[33],"represents":[34],"opportunity":[36],"to":[37,93],"evaluate":[38],"predictive":[40],"power":[41],"of":[42,56,105,114,122,137,169],"biological":[43,82,96,99,127,161],"network":[44],"inference":[45],"for":[46,60,126,135,166],"functional":[48,57,182],"genomics.":[49],"RESULTS:":[50],"Here,":[51],"we":[52],"provide":[53],"compendium":[55],"relationship":[58],"networks":[59,100,156,183],"thaliana":[62,124],"leveraging":[63],"data":[64,125],"integration":[65],"based":[66],"on":[67],"over":[68],"60":[69],"microarray,":[70],"physical":[71],"genetic":[73],"interaction,":[74],"literature":[76,134],"curation":[77],"datasets.":[78],"These":[79,98,154],"include":[80],"tissue,":[81],"process,":[83],"development":[85],"stage":[86],"specific":[87,92,109,160],"networks,":[88,140],"each":[89],"predicting":[90],"relationships":[91],"individual":[95,170],"context.":[97],"enable":[101],"rapid":[103],"investigation":[104],"uncharacterized":[106],"genes":[107],"tissues":[110,176],"developmental":[112,172],"stages":[113],"interest":[115],"summarize":[117],"very":[119],"large":[120],"collection":[121],"A.":[123,178],"examination.":[128],"We":[129],"found":[130],"validation":[131],"many":[136],"our":[138],"predicted":[139,181],"including":[141],"those":[142],"involved":[143],"disease":[145],"resistance,":[146],"root":[147],"hair":[148],"patterning,":[149],"auxin":[151],"homeostasis.":[152],"CONCLUSIONS:":[153],"context-specific":[155],"demonstrate":[157],"that":[158],"highly":[159],"hypotheses":[162],"can":[163],"be":[164],"generated":[165],"diversity":[168],"processes,":[171],"stages,":[173],"thaliana.":[179],"All":[180],"are":[184],"available":[185],"online":[186],"at":[187],"http://function.princeton.edu/arathGraphle.":[188]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}