{"id":"https://openalex.org/W2170432219","doi":"https://doi.org/10.1186/1752-0509-4-117","title":"Curating the innate immunity interactome","display_name":"Curating the innate immunity interactome","publication_year":2010,"publication_date":"2010-08-20","ids":{"openalex":"https://openalex.org/W2170432219","doi":"https://doi.org/10.1186/1752-0509-4-117","mag":"2170432219","pmid":"https://pubmed.ncbi.nlm.nih.gov/20727158"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-117","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-117","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-117","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-117","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085744778","display_name":"David J. Lynn","orcid":"https://orcid.org/0000-0003-4664-1404"},"institutions":[{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"David J Lynn","raw_affiliation_strings":["Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co. Meath, Ireland. david.lynn@teagasc.ie","Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co., Meath, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co. Meath, Ireland. david.lynn@teagasc.ie","institution_ids":["https://openalex.org/I141766778"]},{"raw_affiliation_string":"Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co., Meath, Ireland","institution_ids":["https://openalex.org/I141766778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088416416","display_name":"Calvin C. Chan","orcid":"https://orcid.org/0000-0002-9933-3061"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Calvin Chan","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108537590","display_name":"Misbah Naseer","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Misbah Naseer","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074834612","display_name":"Melissa Yau","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Melissa Yau","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028229255","display_name":"Raymond Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raymond Lo","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017600873","display_name":"Anastasia Sribnaia","orcid":"https://orcid.org/0000-0003-1282-7139"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anastasia Sribnaia","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077748634","display_name":"Giselle Ring","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Giselle Ring","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016795010","display_name":"Jaimmie Que","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jaimmie Que","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052526625","display_name":"Kathleen Wee","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kathleen Wee","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062211058","display_name":"Geoffrey L. Winsor","orcid":"https://orcid.org/0000-0001-6848-1638"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Geoffrey L Winsor","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050640673","display_name":"Matthew R. Laird","orcid":"https://orcid.org/0000-0003-0967-3175"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Matthew R Laird","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032907885","display_name":"Karin Breuer","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Karin Breuer","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004236558","display_name":"Amir Foroushani","orcid":"https://orcid.org/0000-0003-2748-3009"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]}],"countries":["CA","IE"],"is_corresponding":false,"raw_author_name":"Amir K Foroushani","raw_affiliation_strings":["Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co., Meath, Ireland","Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, Co., Meath, Ireland","institution_ids":["https://openalex.org/I141766778"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050197558","display_name":"Fiona S. L. Brinkman","orcid":"https://orcid.org/0000-0002-0584-4099"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fiona SL Brinkman","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066530115","display_name":"Robert E. W. Hancock","orcid":"https://orcid.org/0000-0001-5989-8503"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert EW Hancock","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research,University of British Columbia, 232 - 2259 Lower Mall, Vancouver, British Columbia, V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5085744778"],"corresponding_institution_ids":["https://openalex.org/I141766778"],"apc_list":null,"apc_paid":null,"fwci":4.764,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.95804286,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"117","last_page":"117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7495999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7495999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.04839999973773956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.039900001138448715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/innate-immune-system","display_name":"Innate immune system","score":0.8715124130249023},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8597993850708008},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6323985457420349},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5024735927581787},{"id":"https://openalex.org/keywords/acquired-immune-system","display_name":"Acquired immune system","score":0.4872931241989136},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.46818578243255615},{"id":"https://openalex.org/keywords/immunity","display_name":"Immunity","score":0.4454275369644165},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.23378562927246094},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.2048669159412384},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1708848774433136},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08329802751541138}],"concepts":[{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.8715124130249023},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8597993850708008},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6323985457420349},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5024735927581787},{"id":"https://openalex.org/C193419808","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired immune system","level":3,"score":0.4872931241989136},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.46818578243255615},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.4454275369644165},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.23378562927246094},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.2048669159412384},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1708848774433136},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08329802751541138}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1752-0509-4-117","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-117","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-117","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:20727158","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20727158","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:t-stor.teagasc.ie:11019/265","is_oa":false,"landing_page_url":"http://hdl.handle.net/11019/265","pdf_url":null,"source":{"id":"https://openalex.org/S4306402356","display_name":"T-St\u00f3r (Teagasc)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141766778","host_organization_name":"Teagasc - The Irish Agriculture and Food Development Authority","host_organization_lineage":["https://openalex.org/I141766778"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:circle.library.ubc.ca:2429/56921","is_oa":true,"landing_page_url":"http://hdl.handle.net/2429/56921","pdf_url":null,"source":{"id":"https://openalex.org/S4377196297","display_name":"cIRcle (University of British Columbia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141945490","host_organization_name":"University of British Columbia","host_organization_lineage":["https://openalex.org/I141945490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2936296","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2936296","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:summit.sfu.ca:11058","is_oa":true,"landing_page_url":"http://summit.sfu.ca/item/11058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400490","display_name":"Summit (Simon Fraser University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I18014758","host_organization_name":"Simon Fraser University","host_organization_lineage":["https://openalex.org/I18014758"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.lenus.ie:10147/121245","is_oa":false,"landing_page_url":"http://hdl.handle.net/10147/121245","pdf_url":null,"source":{"id":"https://openalex.org/S4306401756","display_name":"Lenus, The Irish Health Repository (Dr Steevens Hospital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-117","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-117","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-117","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320320849","display_name":"Teagasc","ror":"https://ror.org/03sx84n71"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170432219.pdf","grobid_xml":"https://content.openalex.org/works/W2170432219.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W1489883635","https://openalex.org/W1964314587","https://openalex.org/W1968134126","https://openalex.org/W1976180663","https://openalex.org/W1986661099","https://openalex.org/W1989026631","https://openalex.org/W1994803330","https://openalex.org/W1997654031","https://openalex.org/W2000871561","https://openalex.org/W2002024777","https://openalex.org/W2006222585","https://openalex.org/W2006928776","https://openalex.org/W2006933206","https://openalex.org/W2013009523","https://openalex.org/W2035201715","https://openalex.org/W2037442572","https://openalex.org/W2038781914","https://openalex.org/W2040182688","https://openalex.org/W2043228781","https://openalex.org/W2043973101","https://openalex.org/W2048503857","https://openalex.org/W2053429123","https://openalex.org/W2054684559","https://openalex.org/W2064868405","https://openalex.org/W2065304353","https://openalex.org/W2069075668","https://openalex.org/W2071502814","https://openalex.org/W2075415644","https://openalex.org/W2075876669","https://openalex.org/W2077997913","https://openalex.org/W2087959682","https://openalex.org/W2091437500","https://openalex.org/W2093845596","https://openalex.org/W2095518178","https://openalex.org/W2097698606","https://openalex.org/W2097771645","https://openalex.org/W2103017472","https://openalex.org/W2104315543","https://openalex.org/W2104722369","https://openalex.org/W2105731567","https://openalex.org/W2108010925","https://openalex.org/W2109248504","https://openalex.org/W2111907482","https://openalex.org/W2112204472","https://openalex.org/W2113019448","https://openalex.org/W2113142309","https://openalex.org/W2116437559","https://openalex.org/W2117521332","https://openalex.org/W2118025286","https://openalex.org/W2123060905","https://openalex.org/W2130687290","https://openalex.org/W2132034930","https://openalex.org/W2134928825","https://openalex.org/W2136514583","https://openalex.org/W2138651252","https://openalex.org/W2141137217","https://openalex.org/W2147640266","https://openalex.org/W2150318080","https://openalex.org/W2152653671","https://openalex.org/W2155019453","https://openalex.org/W2155538302","https://openalex.org/W2156333187","https://openalex.org/W2158439765","https://openalex.org/W2159675211","https://openalex.org/W2161995310","https://openalex.org/W2163783674","https://openalex.org/W2335925695","https://openalex.org/W2916767477","https://openalex.org/W2917431650","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4313351689","https://openalex.org/W1551592253","https://openalex.org/W2135436588","https://openalex.org/W2050558417","https://openalex.org/W4225914417","https://openalex.org/W2009405916","https://openalex.org/W2087547757","https://openalex.org/W3030144597","https://openalex.org/W2498374562","https://openalex.org/W2951371476"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"innate":[2,35,85,103,160,194,209,221,251,272],"immune":[3,252],"response":[4],"is":[5,15,52,72,96],"the":[6,32,38,53,57,63,91,99,147,159,176,193,198,218,250,259],"first":[7],"line":[8],"of":[9,34,42,56,59,84,158,188,192,208,258,265,271],"defence":[10],"against":[11],"invading":[12],"pathogens":[13],"and":[14,20,40,62,76,101,110,130,141,167,174,205,224,233,235],"regulated":[16],"by":[17],"complex":[18],"signalling":[19],"transcriptional":[21,204],"networks.":[22,44,69],"Systems":[23],"biology":[24],"approaches":[25],"promise":[26],"to":[27,80,121,200,239,267],"shed":[28],"new":[29],"light":[30],"on":[31],"regulation":[33],"immunity":[36,104,161,195,222],"through":[37],"analysis":[39,173,191,270],"modelling":[41],"these":[43,68,212],"A":[45],"key":[46],"initial":[47],"step":[48],"in":[49,106,126,249],"this":[50,60],"process":[51],"contextual":[54,108],"cataloguing":[55],"components":[58],"system":[61],"molecular":[64,74],"interactions":[65,123,138],"that":[66,178,190],"comprise":[67],"InnateDB":[70,92,156,260],"(http://www.innatedb.com)":[71],"a":[73,127,263],"interaction":[75],"pathway":[77,168],"database":[78],"developed":[79,120],"facilitate":[81],"systems-level":[82,172,269],"analyses":[83,213],"immunity.":[86,210,273],"RESULTS:":[87],"Here,":[88,150],"we":[89,151,184],"describe":[90],"curation":[93,114,157,181,257],"project,":[94],"which":[95,117,242],"manually":[97],"annotating":[98],"human":[100],"mouse":[102],"interactome":[105,162,196,261],"rich":[107],"detail,":[109],"present":[111,152],"our":[112],"novel":[113,202],"software":[115],"system,":[116],"has":[118,163,197],"been":[119,144,247],"ensure":[122],"are":[124],"curated":[125,145],"highly":[128],"accurate":[129],"data-standards":[131],"compliant":[132],"manner.":[133],"To":[134],"date,":[135],"over":[136],"13,000":[137],"(protein,":[139],"DNA":[140],"RNA)":[142],"have":[143,245],"from":[146],"biomedical":[148],"literature.":[149],"data,":[153],"illustrating":[154],"how":[155],"greatly":[164],"enhanced":[165],"network":[166],"annotation":[169],"available":[170],"for":[171],"discuss":[175],"challenges":[177],"face":[179],"such":[180,228],"efforts.":[182],"Significantly,":[183],"provide":[185,215],"several":[186],"lines":[187],"evidence":[189],"potential":[199],"identify":[201],"signalling,":[203],"post-transcriptional":[206],"regulators":[207],"Additionally,":[211],"also":[214],"insight":[216],"into":[217],"cross-talk":[219],"between":[220],"pathways":[223],"other":[225,240],"biological":[226],"processes,":[227],"as":[229,243],"adaptive":[230],"immunity,":[231],"cancer":[232],"diabetes,":[234],"intriguingly,":[236],"suggests":[237],"links":[238],"pathways,":[241],"yet,":[244],"not":[246],"implicated":[248],"response.":[253],"CONCLUSIONS:":[254],"In":[255],"summary,":[256],"provides":[262],"wealth":[264],"information":[266],"enable":[268]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":19}],"updated_date":"2026-05-15T08:27:34.491423","created_date":"2025-10-10T00:00:00"}
