{"id":"https://openalex.org/W2085945924","doi":"https://doi.org/10.1186/1752-0509-4-114","title":"Integration of metabolic databases for the reconstruction of genome-scale metabolic networks","display_name":"Integration of metabolic databases for the reconstruction of genome-scale metabolic networks","publication_year":2010,"publication_date":"2010-08-16","ids":{"openalex":"https://openalex.org/W2085945924","doi":"https://doi.org/10.1186/1752-0509-4-114","mag":"2085945924","pmid":"https://pubmed.ncbi.nlm.nih.gov/20712863"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-4-114","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-114","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-114","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-114","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009708425","display_name":"Karin Radrich","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["DE","GB"],"is_corresponding":true,"raw_author_name":"Karin Radrich","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, UK","Faculty of Life Sciences, University of Manchester, Manchester, UK","Helmholtz-Zentrum M\u00fcnchen, Technische Universit\u00e4t M\u00fcnchen, M\u00fcnchen, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Helmholtz-Zentrum M\u00fcnchen, Technische Universit\u00e4t M\u00fcnchen, M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064113904","display_name":"Yoshimasa Tsuruoka","orcid":"https://orcid.org/0000-0002-0707-1077"},"institutions":[{"id":"https://openalex.org/I177738480","display_name":"Japan Advanced Institute of Science and Technology","ror":"https://ror.org/03frj4r98","country_code":"JP","type":"education","lineage":["https://openalex.org/I177738480"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"Yoshimasa Tsuruoka","raw_affiliation_strings":["Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, 923-1292, Japan","National Centre for Text Mining, University of Manchester, Manchester, M1, 7DN, UK","Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, Japan","National Centre for Text Mining, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, 923-1292, Japan","institution_ids":["https://openalex.org/I177738480"]},{"raw_affiliation_string":"National Centre for Text Mining, University of Manchester, Manchester, M1, 7DN, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Japan Advanced Institute of Science and Technology, Nomi, Ishikawa, Japan","institution_ids":["https://openalex.org/I177738480"]},{"raw_affiliation_string":"National Centre for Text Mining, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009478285","display_name":"Paul D. Dobson","orcid":"https://orcid.org/0000-0002-5996-0511"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Dobson","raw_affiliation_strings":["School of Chemistry, University of Manchester, Manchester, M1, 7DN, UK","School of Chemistry, University of Manchester , Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Chemistry, University of Manchester, Manchester, M1, 7DN, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, University of Manchester , Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078169113","display_name":"Albert Gevorgyan","orcid":"https://orcid.org/0000-0003-4473-1000"},"institutions":[{"id":"https://openalex.org/I124261462","display_name":"Oxford Brookes University","ror":"https://ror.org/04v2twj65","country_code":"GB","type":"education","lineage":["https://openalex.org/I124261462"]},{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Albert Gevorgyan","raw_affiliation_strings":["Cell Systems Modelling Group, School of Life Sciences, Oxford Brookes University, Oxford, OX3 0BP, UK","Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, UK","Cell Systems Modelling Group, School of Life Sciences, Oxford Brookes University, Oxford, UK","Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK"],"affiliations":[{"raw_affiliation_string":"Cell Systems Modelling Group, School of Life Sciences, Oxford Brookes University, Oxford, OX3 0BP, UK","institution_ids":["https://openalex.org/I124261462"]},{"raw_affiliation_string":"Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"Cell Systems Modelling Group, School of Life Sciences, Oxford Brookes University, Oxford, UK","institution_ids":["https://openalex.org/I124261462"]},{"raw_affiliation_string":"Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062241736","display_name":"Neil Swainston","orcid":"https://orcid.org/0000-0001-7020-1236"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Swainston","raw_affiliation_strings":["Manchester Centre for Integrative Systems Biology, University of Manchester, Manchester, M1, 7DN, UK","Manchester Centre for Integrative Systems Biology, University of Manchester Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Manchester Centre for Integrative Systems Biology, University of Manchester, Manchester, M1, 7DN, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Manchester Centre for Integrative Systems Biology, University of Manchester Manchester, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015580659","display_name":"Gino Baart","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gino Baart","raw_affiliation_strings":["VIB Department of Plant Systems Biology/Department of Biology, Ghent University, 9052, Gent, Belgium","VIB Department of Plant Systems Biology/Department of Biology, Ghent University, Gent, Belgium"],"affiliations":[{"raw_affiliation_string":"VIB Department of Plant Systems Biology/Department of Biology, Ghent University, 9052, Gent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB Department of Plant Systems Biology/Department of Biology, Ghent University, Gent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046134592","display_name":"Jean\u2010Marc Schwartz","orcid":"https://orcid.org/0000-0002-6472-0184"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jean-Marc Schwartz","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK","[Faculty of Life Sciences, University of Manchester, Manchester, UK]"],"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"[Faculty of Life Sciences, University of Manchester, Manchester, UK]","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009708425"],"corresponding_institution_ids":["https://openalex.org/I28407311","https://openalex.org/I62916508"],"apc_list":null,"apc_paid":null,"fwci":6.2349,"has_fulltext":true,"cited_by_count":98,"citation_normalized_percentile":{"value":0.9731237,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"114","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6662088632583618},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6552714109420776},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5727404952049255},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5355358719825745},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5256850719451904},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5155436992645264},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.45216691493988037},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4463005065917969},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4300428628921509},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42692768573760986},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41843512654304504},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41374915838241577},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39112338423728943},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3551827669143677},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3409046530723572},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2639520466327667},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24802514910697937},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18488001823425293},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12886282801628113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10323545336723328}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6662088632583618},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6552714109420776},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5727404952049255},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5355358719825745},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5256850719451904},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5155436992645264},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.45216691493988037},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4463005065917969},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4300428628921509},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42692768573760986},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41843512654304504},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41374915838241577},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39112338423728943},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3551827669143677},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3409046530723572},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2639520466327667},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24802514910697937},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18488001823425293},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12886282801628113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10323545336723328},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1752-0509-4-114","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-114","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-114","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:20712863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20712863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/7e678f0b-1724-4459-8def-d338fbb7f2ef","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/7e678f0b-1724-4459-8def-d338fbb7f2ef","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Radrich, K, Tsuruoka, Y, Dobson, P, Gevorgyan, A, Swainston, N, Baart, G & Schwartz, J M 2010, 'Integration of metabolic databases for the reconstruction of genome-scale metabolic networks', BMC Systems Biology, vol. 4, 114. https://doi.org/10.1186/1752-0509-4-114","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:alma.44SUR_INST:11138822950002346","is_oa":false,"landing_page_url":"http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&amp;SrcApp=PARTNER_APP&amp;SrcAuth=LinksAMR&amp;KeyUT=WOS:000282258900001&amp;DestLinkType=FullRecord&amp;DestApp=ALL_WOS&amp;UsrCustomerID=11d2a86992e85fb529977dad66a846d5","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:epubs.surrey.ac.uk:822877","is_oa":false,"landing_page_url":"http://epubs.surrey.ac.uk/822877/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2007184","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2930596","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:2947","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=2947","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst. Biol. 4:114 (2010)","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/7e678f0b-1724-4459-8def-d338fbb7f2ef","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/integration-of-metabolic-databases-for-the-reconstruction-of-genomescale-metabolic-networks(7e678f0b-1724-4459-8def-d338fbb7f2ef).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Radrich, K, Tsuruoka, Y, Dobson, P, Gevorgyan, A, Swainston, N, Baart, G & Schwartz, J M 2010, 'Integration of metabolic databases for the reconstruction of genome-scale metabolic networks', BMC Systems Biology, vol. 4, 114. https://doi.org/10.1186/1752-0509-4-114","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-4-114","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-4-114","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-4-114","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1934935867","display_name":null,"funder_award_id":"Engineering and Physical Sciences R","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3752877916","display_name":null,"funder_award_id":"BB/F006012/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6155374988","display_name":null,"funder_award_id":"EP/E036252/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6808703305","display_name":"Ondex","funder_award_id":"BB/F006012/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7377904560","display_name":null,"funder_award_id":"Engin","funder_id":"https://openalex.org/F4320323383","funder_display_name":"Technische Universit\u00e4t M\u00fcnchen"}],"funders":[{"id":"https://openalex.org/F4320311738","display_name":"Oxford Brookes University","ror":"https://ror.org/04v2twj65"},{"id":"https://openalex.org/F4320321979","display_name":"University of Surrey","ror":"https://ror.org/00ks66431"},{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320325697","display_name":"Faculty of Health and Medical Sciences, University of Western Australia","ror":null},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2085945924.pdf","grobid_xml":"https://content.openalex.org/works/W2085945924.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1640748652","https://openalex.org/W1976672440","https://openalex.org/W1978242826","https://openalex.org/W1983202741","https://openalex.org/W1989834839","https://openalex.org/W1989846822","https://openalex.org/W1990451437","https://openalex.org/W1995828353","https://openalex.org/W1998777096","https://openalex.org/W2020561965","https://openalex.org/W2020916135","https://openalex.org/W2033377040","https://openalex.org/W2035787551","https://openalex.org/W2038702914","https://openalex.org/W2039188848","https://openalex.org/W2041654139","https://openalex.org/W2046653743","https://openalex.org/W2047632644","https://openalex.org/W2057498577","https://openalex.org/W2062194675","https://openalex.org/W2072013780","https://openalex.org/W2079531107","https://openalex.org/W2083011190","https://openalex.org/W2085993965","https://openalex.org/W2092531880","https://openalex.org/W2096245011","https://openalex.org/W2098609989","https://openalex.org/W2099526830","https://openalex.org/W2104108767","https://openalex.org/W2108859156","https://openalex.org/W2110845902","https://openalex.org/W2115037790","https://openalex.org/W2117923593","https://openalex.org/W2121519590","https://openalex.org/W2123060905","https://openalex.org/W2125776280","https://openalex.org/W2127872845","https://openalex.org/W2128572161","https://openalex.org/W2133556195","https://openalex.org/W2133627190","https://openalex.org/W2134221731","https://openalex.org/W2144656637","https://openalex.org/W2144885342","https://openalex.org/W2153373497","https://openalex.org/W2155471967","https://openalex.org/W2155741020","https://openalex.org/W2158440231","https://openalex.org/W2159675211","https://openalex.org/W2163841023","https://openalex.org/W2169803818","https://openalex.org/W2626108727","https://openalex.org/W2888534883","https://openalex.org/W3103786587"],"related_works":["https://openalex.org/W2133150343","https://openalex.org/W2062993691","https://openalex.org/W2072067873","https://openalex.org/W2047632644","https://openalex.org/W2031492751","https://openalex.org/W3033588432","https://openalex.org/W2147102947","https://openalex.org/W2075919068","https://openalex.org/W1989168955","https://openalex.org/W235738631"],"abstract_inverted_index":{"This":[0],"semi-automated":[1],"methodology":[2],"may":[3],"be":[4],"applied":[5],"to":[6,11,21,28],"other":[7],"organisms":[8],"and":[9],"help":[10],"streamline":[12],"the":[13,23],"process":[14],"of":[15,25],"genome-scale":[16],"network":[17],"reconstruction":[18],"in":[19],"order":[20],"accelerate":[22],"transfer":[24],"such":[26],"models":[27],"applications.":[29]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":14}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
