{"id":"https://openalex.org/W1999091954","doi":"https://doi.org/10.1186/1752-0509-3-62","title":"Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains","display_name":"Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains","publication_year":2009,"publication_date":"2009-06-16","ids":{"openalex":"https://openalex.org/W1999091954","doi":"https://doi.org/10.1186/1752-0509-3-62","mag":"1999091954","pmid":"https://pubmed.ncbi.nlm.nih.gov/19531207"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-3-62","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-3-62","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-3-62","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-3-62","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020945679","display_name":"Patricia Buendia","orcid":"https://orcid.org/0000-0001-7612-8842"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Patricia Buendia","raw_affiliation_strings":["Department of Biology and Center for Computational Science, University of Miami, Coral Gables, FL 33146, USA. pbuendia@miami.edu","Department of Biology and Center for Computational Science, University of Miami, Coral Gables, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Center for Computational Science, University of Miami, Coral Gables, FL 33146, USA. pbuendia@miami.edu","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Biology and Center for Computational Science, University of Miami, Coral Gables, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068890173","display_name":"Giri Narasimhan","orcid":"https://orcid.org/0000-0003-0535-4871"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giri Narasimhan","raw_affiliation_strings":["Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, 33199, USA","Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, FL, 33199, USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020945679"],"corresponding_institution_ids":["https://openalex.org/I145608581"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.1053,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.44792104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":"1","first_page":"62","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9501000046730042,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9501000046730042,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.02669999934732914,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11655","display_name":"HIV-related health complications and treatments","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/2711","display_name":"Emergency Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6788837313652039},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6646678447723389},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5730020999908447},{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.5054948329925537},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4912037253379822},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4733079671859741},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.47144946455955505},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4416099786758423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4176541566848755},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.414293110370636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41004183888435364},{"id":"https://openalex.org/keywords/viral-evolution","display_name":"Viral evolution","score":0.41001278162002563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2657163441181183},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21193066239356995},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1470262110233307},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1372896432876587}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6788837313652039},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6646678447723389},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5730020999908447},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.5054948329925537},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4912037253379822},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4733079671859741},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.47144946455955505},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4416099786758423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4176541566848755},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.414293110370636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41004183888435364},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.41001278162002563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2657163441181183},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21193066239356995},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1470262110233307},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1372896432876587},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-3-62","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-3-62","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-3-62","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:19531207","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19531207","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2709891","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2709891","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.fiu.edu:cs_fac-1003","is_oa":true,"landing_page_url":"https://digitalcommons.fiu.edu/cs_fac/4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401637","display_name":"Florida International University Digital Commons (Florida International University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19700959","host_organization_name":"Florida International University","host_organization_lineage":["https://openalex.org/I19700959"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"School of Computing and Information Sciences","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-3-62","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-3-62","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-3-62","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.800000011920929,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1229402528","display_name":null,"funder_award_id":"R25-GM-061347","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2443850147","display_name":"Florida International University MBRS RISE Program (Option III)","funder_award_id":"4r25gm061347-17","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2839295405","display_name":"MBRS Support of Continuous Research Excellence at FIU","funder_award_id":"3s06gm008205-22s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G476935913","display_name":null,"funder_award_id":"R25 GM61347","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G708653303","display_name":null,"funder_award_id":"S06-GM008205","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320309249","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1999091954.pdf","grobid_xml":"https://content.openalex.org/works/W1999091954.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W842909456","https://openalex.org/W1587920675","https://openalex.org/W1677343302","https://openalex.org/W1844957168","https://openalex.org/W1880845650","https://openalex.org/W1966066839","https://openalex.org/W1973667633","https://openalex.org/W1974566789","https://openalex.org/W1992055434","https://openalex.org/W1992586746","https://openalex.org/W1997321423","https://openalex.org/W2007607803","https://openalex.org/W2013711784","https://openalex.org/W2015085014","https://openalex.org/W2035207391","https://openalex.org/W2060534902","https://openalex.org/W2067575635","https://openalex.org/W2099239034","https://openalex.org/W2103542196","https://openalex.org/W2105933126","https://openalex.org/W2108504053","https://openalex.org/W2111207219","https://openalex.org/W2116789308","https://openalex.org/W2116794821","https://openalex.org/W2125263596","https://openalex.org/W2126515754","https://openalex.org/W2130291963","https://openalex.org/W2139338553","https://openalex.org/W2144413761","https://openalex.org/W2145449008","https://openalex.org/W2154331465","https://openalex.org/W2155998147","https://openalex.org/W2158597791","https://openalex.org/W3124187449","https://openalex.org/W4239321771","https://openalex.org/W7061342298"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,110,260],"HIV":[2,225,268,278],"virus":[3,172,286],"is":[4],"known":[5],"for":[6,153,184],"its":[7,18],"ability":[8],"to":[9,16,38,80,124,206,254,266,283,292,295],"exploit":[10],"numerous":[11],"genetic":[12],"and":[13,25,76,132,166,173,242,257],"evolutionary":[14,83,92,115,134,222],"mechanisms":[15],"ensure":[17],"proliferation,":[19],"among":[20],"them,":[21],"high":[22],"replication,":[23],"mutation":[24],"recombination":[26,78,148,161,167],"rates.":[27],"Sliding":[28,66],"MinPD,":[29],"a":[30,53,72,95,103,107,176],"recently":[31],"introduced":[32],"computational":[33],"method":[34,265],"1,":[35],"was":[36,117],"used":[37],"investigate":[39],"the":[40,57,82,99,114,133,140,144,154,158,187,209,232,237,240,271,275,285],"patterns":[41,248],"of":[42,44,59,85,98,102,113,121,157,186,191,197,224,231,239,247,249,262,274],"evolution":[43,250],"serially-sampled":[45],"HIV-1":[46],"sequence":[47,87],"data":[48,269],"from":[49,175],"eight":[50],"patients":[51,188],"with":[52,71,119],"special":[54],"focus":[55],"on":[56,139],"emergence":[58],"X4":[60,159],"strains.":[61],"Unlike":[62],"other":[63],"phylogenetic":[64],"methods,":[65],"MinPD":[67],"combines":[68],"distance-based":[69],"inference":[70],"nonparametric":[73],"bootstrap":[74],"procedure":[75],"automated":[77],"detection":[79],"reconstruct":[81],"history":[84],"longitudinal":[86,96,111],"data.":[88],"We":[89],"present":[90],"serial":[91,221],"networks":[93,116,142,223],"as":[94],"representation":[97,112],"mutational":[100],"pathways":[101],"viral":[104,210,289],"population":[105],"in":[106,208,236,281,287],"within-host":[108],"environment.":[109],"complemented":[118],"charts":[120],"clinical":[122,130],"markers":[123],"facilitate":[125,245],"correlation":[126],"analysis":[127,230],"between":[128,163,169],"pertinent":[129],"information":[131],"relationships.":[135],"RESULTS:":[136],"Analysis":[137],"based":[138],"predicted":[141,200],"suggests":[143],"following::":[145],"significantly":[146,194],"stronger":[147],"signals":[149],"(p":[150,213],"=":[151,214],"0.003)":[152],"inferred":[155],"ancestors":[156],"strains,":[160],"events":[162,168],"different":[164],"lineages":[165],"putative":[170],"reservoir":[171],"those":[174],"later":[177],"population,":[178],"an":[179],"early":[180],"star-like":[181],"topology":[182,238],"observed":[183],"four":[185],"who":[189],"died":[190],"AIDS.":[192],"A":[193],"higher":[195],"number":[196],"recombinants":[198],"were":[199],"at":[201],"sampling":[202],"points":[203],"that":[204,220,251,280],"corresponded":[205],"peaks":[207],"load":[211],"levels":[212],"0.0042).":[215],"CONCLUSION:":[216],"Our":[217],"results":[218],"indicate":[219],"sequences":[226],"enable":[227],"systematic":[228],"statistical":[229],"implicit":[233],"relations":[234],"embedded":[235],"structure":[241],"can":[243,252],"greatly":[244],"identification":[246],"lead":[253],"specific":[255],"hypotheses":[256],"new":[258,276],"insights.":[259],"conclusions":[261],"applying":[263],"our":[264],"empirical":[267],"support":[270],"conventional":[272],"wisdom":[273],"generation":[277],"treatments,":[279],"order":[282],"keep":[284],"check,":[288],"loads":[290],"need":[291],"be":[293],"suppressed":[294],"almost":[296],"undetectable":[297],"levels.":[298]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
