{"id":"https://openalex.org/W2056166908","doi":"https://doi.org/10.1186/1752-0509-2-23","title":"Interactive analysis of systems biology molecular expression data","display_name":"Interactive analysis of systems biology molecular expression data","publication_year":2008,"publication_date":"2008-02-29","ids":{"openalex":"https://openalex.org/W2056166908","doi":"https://doi.org/10.1186/1752-0509-2-23","mag":"2056166908","pmid":"https://pubmed.ncbi.nlm.nih.gov/18312669"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-2-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-23","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077290356","display_name":"Mingwu Zhang","orcid":"https://orcid.org/0000-0001-8551-8826"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingwu Zhang","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA. mzhang2@purdue.edu","Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA. mzhang2@purdue.edu","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056459691","display_name":"Qi Ouyang","orcid":"https://orcid.org/0000-0003-1585-7368"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Ouyang","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003925031","display_name":"Alan Stephenson","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Stephenson","raw_affiliation_strings":["Department of Computer and Information Technology, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Technology, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081340453","display_name":"Michael D. Kane","orcid":"https://orcid.org/0000-0003-0021-6875"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael D Kane","raw_affiliation_strings":["Department of Computer and Information Technology, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Technology, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044903153","display_name":"David E. Salt","orcid":"https://orcid.org/0000-0003-0283-0991"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David E Salt","raw_affiliation_strings":["Department of Horticulture, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006023930","display_name":"Sunil Prabhakar","orcid":"https://orcid.org/0000-0002-1224-3849"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunil Prabhakar","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047247554","display_name":"John W. Burgner","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Burgner","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113582279","display_name":"Charles R. Buck","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Buck","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100368911","display_name":"Xiang Zhang","orcid":"https://orcid.org/0000-0003-1003-9892"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiang Zhang","raw_affiliation_strings":["Department of Chemistry, Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY, 40292, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100368911"],"corresponding_institution_ids":["https://openalex.org/I142740786"],"apc_list":null,"apc_paid":null,"fwci":0.8413,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72598295,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.2685999870300293,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.2685999870300293,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.2053000032901764,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.04390000179409981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7470503449440002},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7164028882980347},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6501640677452087},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6147246956825256},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5868951678276062},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5854023098945618},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5622884631156921},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.515521764755249},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5154638886451721},{"id":"https://openalex.org/keywords/interactive-visual-analysis","display_name":"Interactive visual analysis","score":0.45627206563949585},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.4536161422729492},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44553661346435547},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4325108826160431},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32021069526672363},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20241793990135193},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11119988560676575}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7470503449440002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7164028882980347},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6501640677452087},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6147246956825256},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5868951678276062},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5854023098945618},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5622884631156921},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.515521764755249},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5154638886451721},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.45627206563949585},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.4536161422729492},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44553661346435547},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4325108826160431},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32021069526672363},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20241793990135193},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11119988560676575},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-2-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:18312669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18312669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:f63387b22961400391a18a5784c307df","is_oa":false,"landing_page_url":"https://doaj.org/article/f63387b22961400391a18a5784c307df","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 2, Iss 1, p 23 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2294108","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2294108","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-2-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5400000214576721}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2056166908.pdf","grobid_xml":"https://content.openalex.org/works/W2056166908.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1566965859","https://openalex.org/W1996346352","https://openalex.org/W2008201842","https://openalex.org/W2009543464","https://openalex.org/W2024571181","https://openalex.org/W2028183169","https://openalex.org/W2034550158","https://openalex.org/W2090546075","https://openalex.org/W2094094286","https://openalex.org/W2102664288","https://openalex.org/W2110962012","https://openalex.org/W2112575602","https://openalex.org/W2114390083","https://openalex.org/W2124024970","https://openalex.org/W2156779720","https://openalex.org/W2159675211","https://openalex.org/W2165533101","https://openalex.org/W2166430819","https://openalex.org/W2167482691","https://openalex.org/W3097169496"],"related_works":["https://openalex.org/W3001728174","https://openalex.org/W2906286747","https://openalex.org/W4234837714","https://openalex.org/W2914351970","https://openalex.org/W4365511789","https://openalex.org/W2955413729","https://openalex.org/W3160312683","https://openalex.org/W1992888948","https://openalex.org/W2948880107","https://openalex.org/W2584704589"],"abstract_inverted_index":{"BACKGROUND:":[0],"Systems":[1],"biology":[2],"aims":[3],"to":[4,23,41,147,166,173],"understand":[5],"biological":[6,117],"systems":[7,46,206],"on":[8],"a":[9,65,89,129],"comprehensive":[10],"scale,":[11],"such":[12,154],"that":[13,16,97,190],"the":[14,19,73,77,103,191],"components":[15],"make":[17],"up":[18],"whole":[20],"are":[21,39],"connected":[22],"one":[24],"another":[25],"and":[26,33,70,124,140],"work":[27],"through":[28],"dependent":[29],"interactions.":[30],"Molecular":[31],"correlations":[32],"comparative":[34,148],"studies":[35],"of":[36,83,105,112,150,177,201],"molecular":[37,84,109,151,202],"expression":[38,110,152,203],"crucial":[40],"establishing":[42],"interdependent":[43],"connections":[44],"in":[45,171,180,205],"biology.":[47,207],"The":[48,57,160],"existing":[49],"software":[50,193],"packages":[51],"provide":[52],"limited":[53],"data":[54,63,67,75,93,107,126],"mining":[55,68,94,127],"capability.":[56],"user":[58],"must":[59],"first":[60],"generate":[61],"visualization":[62,78,82,123],"with":[64,138],"preferred":[66],"algorithm":[69],"then":[71],"upload":[72],"resulting":[74],"into":[76,128],"package":[79],"for":[80,102,198],"graphic":[81,122],"relations.":[85],"RESULTS:":[86],"Presented":[87],"is":[88,144,194],"novel":[90],"interactive":[91,100,121,199],"visual":[92],"application,":[95],"SysNet":[96,132,161,192],"provides":[98],"an":[99,174,195],"environment":[101],"analysis":[104,149,200],"high":[106],"volume":[108],"information":[111,137,204],"most":[113],"any":[114],"type":[115],"from":[116],"systems.":[118],"It":[119,143],"integrates":[120],"statistical":[125],"single":[130],"package.":[131],"interactively":[133],"presents":[134],"intermolecular":[135],"correlation":[136],"circular":[139],"heatmap":[141],"layouts.":[142],"also":[145],"applicable":[146],"data,":[153],"as":[155],"time":[156],"course":[157],"data.":[158],"CONCLUSION:":[159],"program":[162],"has":[163],"been":[164],"utilized":[165],"analyze":[167],"elemental":[168],"profile":[169],"changes":[170],"response":[172],"increasing":[175],"concentration":[176],"iron":[178],"(Fe)":[179],"growth":[181],"media":[182],"(an":[183],"ionomics":[184],"dataset).":[185],"This":[186],"study":[187],"case":[188],"demonstrates":[189],"effective":[196],"platform":[197]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
