{"id":"https://openalex.org/W2155304565","doi":"https://doi.org/10.1186/1752-0509-2-16","title":"Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants","display_name":"Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants","publication_year":2008,"publication_date":"2008-02-04","ids":{"openalex":"https://openalex.org/W2155304565","doi":"https://doi.org/10.1186/1752-0509-2-16","mag":"2155304565","pmid":"https://pubmed.ncbi.nlm.nih.gov/18248680"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-2-16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-16","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-16","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052454206","display_name":"David J. Weston","orcid":"https://orcid.org/0000-0002-4794-9913"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David J Weston","raw_affiliation_strings":["Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6422, USA. westondj@ornl.gov","Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6422, USA. westondj@ornl.gov","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078164768","display_name":"Lee E. Gunter","orcid":"https://orcid.org/0000-0003-1211-7532"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee E Gunter","raw_affiliation_strings":["Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075978056","display_name":"Alistair Rogers","orcid":"https://orcid.org/0000-0001-9262-7430"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alistair Rogers","raw_affiliation_strings":["Department of Crop Sciences, University of Illinois at Urbana Champaign, Urbana, IL, 61801, USA","Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973-5000, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Crop Sciences, University of Illinois at Urbana Champaign, Urbana, IL, 61801, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973-5000, USA","institution_ids":["https://openalex.org/I200870766"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061034566","display_name":"Stan D. Wullschleger","orcid":"https://orcid.org/0000-0002-9869-0446"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stan D Wullschleger","raw_affiliation_strings":["Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831-6422, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052454206"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":null,"apc_paid":null,"fwci":13.7293,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.98868496,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2","issue":"1","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5690000057220459,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.5690000057220459,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10014","display_name":"Plant Stress Responses and Tolerance","score":0.10289999842643738,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.0723000019788742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7854404449462891},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.7575281858444214},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7457484006881714},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5881898403167725},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5226797461509705},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5208971500396729},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5059563517570496},{"id":"https://openalex.org/keywords/phenotypic-plasticity","display_name":"Phenotypic plasticity","score":0.49704745411872864},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4942786693572998},{"id":"https://openalex.org/keywords/abiotic-stress","display_name":"Abiotic stress","score":0.47651350498199463},{"id":"https://openalex.org/keywords/phenotypic-trait","display_name":"Phenotypic trait","score":0.4504842758178711},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4497494697570801},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4424591064453125},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.43191713094711304},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.36288607120513916},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28597915172576904}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7854404449462891},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.7575281858444214},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7457484006881714},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5881898403167725},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5226797461509705},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5208971500396729},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5059563517570496},{"id":"https://openalex.org/C62277055","wikidata":"https://www.wikidata.org/wiki/Q295130","display_name":"Phenotypic plasticity","level":2,"score":0.49704745411872864},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4942786693572998},{"id":"https://openalex.org/C89519541","wikidata":"https://www.wikidata.org/wiki/Q4667893","display_name":"Abiotic stress","level":3,"score":0.47651350498199463},{"id":"https://openalex.org/C130073038","wikidata":"https://www.wikidata.org/wiki/Q1211967","display_name":"Phenotypic trait","level":4,"score":0.4504842758178711},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4497494697570801},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4424591064453125},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.43191713094711304},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.36288607120513916},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28597915172576904}],"mesh":[{"descriptor_ui":"D004190","descriptor_name":"Disasters","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004190","descriptor_name":"Disasters","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004190","descriptor_name":"Disasters","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004777","descriptor_name":"Environment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009995","descriptor_name":"Osmosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009995","descriptor_name":"Osmosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009995","descriptor_name":"Osmosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012492","descriptor_name":"Salts","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D012492","descriptor_name":"Salts","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D012492","descriptor_name":"Salts","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-2-16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-16","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-16","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:18248680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18248680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2277374","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2277374","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-2-16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-2-16","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-2-16","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Climate action","id":"https://metadata.un.org/sdg/13","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1637692498","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1719536385","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2542161959","display_name":null,"funder_award_id":"DE-AC02-98CH10886","funder_id":"https://openalex.org/F4320338289","funder_display_name":"Brookhaven National Laboratory"},{"id":"https://openalex.org/G3121793570","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3243759740","display_name":null,"funder_award_id":"DE-AC02-98CH10886","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3817554387","display_name":null,"funder_award_id":"DE-AC02-98CH10886","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3850726219","display_name":null,"funder_award_id":"AC02-98CH10886","funder_id":"https://openalex.org/F4320338289","funder_display_name":"Brookhaven National Laboratory"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5378045775","display_name":null,"funder_award_id":"AC02-98CH10886","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6129992089","display_name":null,"funder_award_id":"DE-AC05-","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8943143067","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320316892","display_name":"UT-Battelle","ror":"https://ror.org/04nza6677"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"},{"id":"https://openalex.org/F4320338289","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155304565.pdf","grobid_xml":"https://content.openalex.org/works/W2155304565.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1515291112","https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1899578943","https://openalex.org/W1966426854","https://openalex.org/W1973241619","https://openalex.org/W1973651601","https://openalex.org/W1982335518","https://openalex.org/W1983445269","https://openalex.org/W1983729367","https://openalex.org/W1996202645","https://openalex.org/W2001191754","https://openalex.org/W2013522363","https://openalex.org/W2015801204","https://openalex.org/W2016987206","https://openalex.org/W2019339067","https://openalex.org/W2026250677","https://openalex.org/W2029980980","https://openalex.org/W2034403778","https://openalex.org/W2039365544","https://openalex.org/W2040779844","https://openalex.org/W2047615738","https://openalex.org/W2055577456","https://openalex.org/W2057498577","https://openalex.org/W2059880902","https://openalex.org/W2060705109","https://openalex.org/W2066669827","https://openalex.org/W2068229930","https://openalex.org/W2069076118","https://openalex.org/W2069733150","https://openalex.org/W2074067714","https://openalex.org/W2081098333","https://openalex.org/W2097186235","https://openalex.org/W2097903157","https://openalex.org/W2098007670","https://openalex.org/W2099742755","https://openalex.org/W2101859647","https://openalex.org/W2102992354","https://openalex.org/W2108541470","https://openalex.org/W2110065044","https://openalex.org/W2114325411","https://openalex.org/W2118392371","https://openalex.org/W2121001818","https://openalex.org/W2121604817","https://openalex.org/W2124935975","https://openalex.org/W2125979970","https://openalex.org/W2126124351","https://openalex.org/W2126623160","https://openalex.org/W2130410032","https://openalex.org/W2131621063","https://openalex.org/W2131959880","https://openalex.org/W2133408621","https://openalex.org/W2134783591","https://openalex.org/W2141102916","https://openalex.org/W2146264532","https://openalex.org/W2148541040","https://openalex.org/W2151820055","https://openalex.org/W2152972832","https://openalex.org/W2154260772","https://openalex.org/W2154562363","https://openalex.org/W2157236929","https://openalex.org/W2161688052","https://openalex.org/W2161736228","https://openalex.org/W2163480486","https://openalex.org/W2165898800","https://openalex.org/W2184301063"],"related_works":["https://openalex.org/W4206809802","https://openalex.org/W1969370271","https://openalex.org/W4376115412","https://openalex.org/W2939898561","https://openalex.org/W3014330512","https://openalex.org/W4309935855","https://openalex.org/W2156421048","https://openalex.org/W2135896045","https://openalex.org/W2884256268","https://openalex.org/W2131025197"],"abstract_inverted_index":{"BACKGROUND:":[0],"One":[1],"of":[2,19,34,87,114,133,161,195,232,245],"the":[3,12,20,31,59,85,122,131,134,147,151,159],"eminent":[4],"opportunities":[5],"afforded":[6],"by":[7,22],"modern":[8],"genomic":[9,52,78,115,185],"technologies":[10],"is":[11,212],"potential":[13],"to":[14,27,57,83,120,130,145,180,187,201,214,225,236,256],"provide":[15,240],"a":[16,88,112,170,192,229,243],"mechanistic":[17,230],"understanding":[18,231,250],"processes":[21],"which":[23],"genetic":[24],"change":[25],"translates":[26],"phenotypic":[28,66,99,152,178],"variation":[29],"and":[30,64,95,104,136,166,176,216,252],"resultant":[32],"appearance":[33],"distinct":[35],"physiological":[36,60,90,234],"traits.":[37],"Indeed":[38],"much":[39],"progress":[40],"has":[41],"been":[42],"made":[43],"in":[44,48,127,203,219,223,249],"this":[45,155],"area,":[46],"particularly":[47],"biomedicine":[49],"where":[50,77,228],"functional":[51],"information":[53,79,211],"can":[54,80,117,239],"be":[55,81,118,138],"used":[56,82,119],"determine":[58,146],"state":[61,91],"(e.g.,":[62,68,92,101],"diagnosis)":[63],"predict":[65,97],"outcome":[67],"patient":[69],"survival).":[70],"Ecology":[71],"currently":[72],"lacks":[73],"an":[74,197],"analogous":[75],"approach":[76],"diagnose":[84],"presence":[86],"given":[89],"stress":[93,102,125,163,173,181,238],"response)":[94],"then":[96,137],"likely":[98],"outcomes":[100],"duration":[103],"tolerance,":[105],"fitness).":[106],"RESULTS:":[107],"Here,":[108],"we":[109,157],"demonstrate":[110],"that":[111,206,208],"compendium":[113],"signatures":[116,186],"classify":[121],"plant":[123,199,220],"abiotic":[124,172,237],"phenotype":[126,200],"Arabidopsis":[128],"according":[129],"architecture":[132],"transcriptome,":[135],"linked":[139],"with":[140,242],"gene":[141,188,204],"coexpression":[142,189],"network":[143],"analysis":[144,190],"underlying":[148],"genes":[149],"governing":[150],"response.":[153],"Using":[154],"approach,":[156],"confirm":[158],"existence":[160],"known":[162],"responsive":[164,174],"pathways":[165],"marker":[167],"genes,":[168],"report":[169],"common":[171],"transcriptome":[175],"relate":[177],"classification":[179],"duration.":[182],"CONCLUSION:":[183],"Linking":[184],"provides":[191],"unique":[193],"method":[194],"relating":[196],"observed":[198],"changes":[202],"expression":[205],"underlie":[207],"phenotype.":[209],"Such":[210],"critical":[213],"current":[215],"future":[217],"investigations":[218],"biology":[221],"and,":[222],"particular,":[224],"evolutionary":[226],"ecology,":[227],"adaptive":[233],"responses":[235],"researchers":[241],"tool":[244],"great":[246],"predictive":[247],"value":[248],"species":[251],"population":[253],"level":[254],"adaptation":[255],"climate":[257],"change.":[258]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
