{"id":"https://openalex.org/W2032739790","doi":"https://doi.org/10.1186/1752-0509-1-45","title":"Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors","display_name":"Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors","publication_year":2007,"publication_date":"2007-10-16","ids":{"openalex":"https://openalex.org/W2032739790","doi":"https://doi.org/10.1186/1752-0509-1-45","mag":"2032739790","pmid":"https://pubmed.ncbi.nlm.nih.gov/17939860"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-1-45","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-1-45","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-1-45","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-1-45","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065687283","display_name":"Claes Andersson","orcid":"https://orcid.org/0000-0001-9819-2474"},"institutions":[{"id":"https://openalex.org/I298625061","display_name":"Swedish University of Agricultural Sciences","ror":"https://ror.org/02yy8x990","country_code":"SE","type":"education","lineage":["https://openalex.org/I298625061"]},{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Claes R Andersson","raw_affiliation_strings":["The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden. claes.andersson@lcb.uu.se","The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden. claes.andersson@lcb.uu.se","institution_ids":["https://openalex.org/I298625061"]},{"raw_affiliation_string":"The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden","institution_ids":["https://openalex.org/I298625061","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022568938","display_name":"Torgeir R. Hvidsten","orcid":"https://orcid.org/0000-0001-6097-2539"},"institutions":[{"id":"https://openalex.org/I298625061","display_name":"Swedish University of Agricultural Sciences","ror":"https://ror.org/02yy8x990","country_code":"SE","type":"education","lineage":["https://openalex.org/I298625061"]},{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Torgeir R Hvidsten","raw_affiliation_strings":["The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden","institution_ids":["https://openalex.org/I298625061","https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025729478","display_name":"Anders Isaksson","orcid":"https://orcid.org/0000-0001-6576-7825"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Anders Isaksson","raw_affiliation_strings":["Department of Medical Sciences, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105419442","display_name":"Mats G. Gustafsson","orcid":null},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Mats G Gustafsson","raw_affiliation_strings":["Department of Engineering Sciences, Uppsala, Sweden","Department of Medical Sciences, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Engineering Sciences, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Medical Sciences, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050406527","display_name":"Jan Komorowski","orcid":"https://orcid.org/0000-0002-0766-8789"},"institutions":[{"id":"https://openalex.org/I298625061","display_name":"Swedish University of Agricultural Sciences","ror":"https://ror.org/02yy8x990","country_code":"SE","type":"education","lineage":["https://openalex.org/I298625061"]},{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Jan Komorowski","raw_affiliation_strings":["The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Linnaeus Centre for Bioinformatics, Uppsala University and Swedish University of Agricultural Sciences, Uppsala, Sweden","institution_ids":["https://openalex.org/I298625061","https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050406527","https://openalex.org/A5105419442"],"corresponding_institution_ids":["https://openalex.org/I123387679","https://openalex.org/I298625061"],"apc_list":null,"apc_paid":null,"fwci":0.6728,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.68233602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"1","issue":"1","first_page":"45","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5358999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.5358999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.20440000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0746999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6101345419883728},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5951506495475769},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5518053770065308},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5211822390556335},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.5138959884643555},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5079689621925354},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5069230198860168},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.47730553150177},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4327555298805237},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41824251413345337},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41452062129974365},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31676149368286133},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2203105092048645}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6101345419883728},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5951506495475769},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5518053770065308},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5211822390556335},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.5138959884643555},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5079689621925354},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5069230198860168},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.47730553150177},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4327555298805237},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41824251413345337},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41452062129974365},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31676149368286133},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2203105092048645},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002453","descriptor_name":"Cell Cycle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-1-45","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-1-45","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-1-45","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:17939860","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17939860","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:fb8d331b26d64556b0dde44d4c25b71b","is_oa":false,"landing_page_url":"https://doaj.org/article/fb8d331b26d64556b0dde44d4c25b71b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, Vol 1, Iss 1, p 45 (2007)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:775918","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2200664","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-1-45","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-1-45","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-1-45","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320940","display_name":"Stiftelsen f\u00f6r\u00a0Strategisk Forskning","ror":"https://ror.org/044wr7g58"},{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032739790.pdf","grobid_xml":"https://content.openalex.org/works/W2032739790.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1497619082","https://openalex.org/W1521092337","https://openalex.org/W1557923305","https://openalex.org/W1575009136","https://openalex.org/W1854555553","https://openalex.org/W1970249028","https://openalex.org/W1989373239","https://openalex.org/W2009559661","https://openalex.org/W2016007284","https://openalex.org/W2053126761","https://openalex.org/W2058879468","https://openalex.org/W2073727170","https://openalex.org/W2080498142","https://openalex.org/W2094923559","https://openalex.org/W2096280725","https://openalex.org/W2098222328","https://openalex.org/W2101913589","https://openalex.org/W2103017472","https://openalex.org/W2103453943","https://openalex.org/W2108420379","https://openalex.org/W2123902215","https://openalex.org/W2125508747","https://openalex.org/W2126602684","https://openalex.org/W2143400096","https://openalex.org/W2150520277","https://openalex.org/W2153978438","https://openalex.org/W2156559501","https://openalex.org/W2158128075","https://openalex.org/W2166103265","https://openalex.org/W2167190345","https://openalex.org/W2168157737","https://openalex.org/W2168525657","https://openalex.org/W2340020088","https://openalex.org/W2563345073","https://openalex.org/W4210774122","https://openalex.org/W4255833381","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2381031055","https://openalex.org/W2366070815","https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W2134575910","https://openalex.org/W4385727351","https://openalex.org/W4306798985","https://openalex.org/W2156421048","https://openalex.org/W2135896045"],"abstract_inverted_index":{"BACKGROUND:":[0],"We":[1,86,142],"address":[2],"the":[3,7,82,88,92,151,195,236],"issue":[4],"of":[5,11,29,51,66,75,91,108,125,153,167,235,248],"explaining":[6],"presence":[8],"or":[9],"absence":[10],"phase-specific":[12],"transcription":[13,109],"in":[14,42,61,139,149,161,174],"budding":[15],"yeast":[16],"cultures":[17],"under":[18],"different":[19,45,133,140],"conditions.":[20,176],"To":[21],"this":[22,70],"end":[23],"we":[24,115,178],"use":[25],"a":[26,205],"model-based":[27,206],"detector":[28],"gene":[30,52],"expression":[31,58,138,173,209],"periodicity":[32],"to":[33,63,81,136,208,216,227,245],"divide":[34],"genes":[35,158,171],"into":[36],"classes":[37,65,95,119],"depending":[38],"on":[39,57],"their":[40],"behavior":[41],"experiments":[43],"using":[44],"synchronization":[46],"methods.":[47],"While":[48],"computational":[49],"inference":[50],"regulatory":[53,89,233],"circuits":[54],"typically":[55],"relies":[56],"similarity":[59],"(clustering)":[60],"order":[62],"find":[64,144],"potentially":[67],"co-regulated":[68],"genes,":[69],"method":[71],"instead":[72],"takes":[73],"advantage":[74],"known":[76,190],"time":[77],"profile":[78],"signatures":[79],"related":[80,192],"studied":[83],"process.":[84],"RESULTS:":[85],"explain":[87],"mechanisms":[90,234],"inferred":[93],"periodic":[94,118,137],"with":[96,104,157,170],"cis-regulatory":[97,154],"descriptors":[98,126,155],"that":[99,117,132,150,180,185],"combine":[100],"upstream":[101],"sequence":[102],"motifs":[103],"experimentally":[105],"determined":[106],"binding":[107],"factors.":[110],"By":[111],"systematic":[112],"statistical":[113],"analysis":[114,210],"show":[116],"are":[120,164,186],"best":[121],"explained":[122],"by":[123],"combinations":[124,134,152,168,184],"rather":[127],"than":[128,194],"single":[129],"descriptors,":[130],"and":[131,239],"correspond":[135],"classes.":[141],"also":[143],"evidence":[145],"for":[146],"additive":[147],"regulation":[148,247],"associated":[156,169],"periodically":[159,172],"expressed":[160],"fewer":[162],"conditions":[163],"frequently":[165,196],"subsets":[166],"more":[175,187,229],"Finally,":[177],"demonstrate":[179],"our":[181],"approach":[182,207,223],"retrieves":[183],"specific":[188],"towards":[189],"cell-cycle":[191],"regulators":[193],"used":[197],"clustering":[198],"approach.":[199],"CONCLUSION:":[200],"The":[201],"results":[202],"illustrate":[203],"how":[204],"may":[211],"be":[212,243],"particularly":[213],"well":[214],"suited":[215],"detect":[217],"biologically":[218],"relevant":[219],"mechanisms.":[220],"Our":[221],"new":[222],"makes":[224],"it":[225,240],"possible":[226],"provide":[228],"refined":[230],"hypotheses":[231],"about":[232],"cell":[237],"cycle":[238],"can":[241],"easily":[242],"adjusted":[244],"reveal":[246],"other,":[249],"non-periodic,":[250],"cellular":[251],"processes.":[252]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
