{"id":"https://openalex.org/W2109787320","doi":"https://doi.org/10.1186/1751-0473-9-2","title":"MOSAL: software tools for multiobjective sequence alignment","display_name":"MOSAL: software tools for multiobjective sequence alignment","publication_year":2014,"publication_date":"2014-01-08","ids":{"openalex":"https://openalex.org/W2109787320","doi":"https://doi.org/10.1186/1751-0473-9-2","mag":"2109787320","pmid":"https://pubmed.ncbi.nlm.nih.gov/24401750"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-2","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-9-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-9-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055996291","display_name":"Lu\u00eds Paquete","orcid":"https://orcid.org/0000-0001-7525-8901"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Lu\u00eds Paquete","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067241681","display_name":"Pedro M. C. Matias","orcid":"https://orcid.org/0000-0003-2121-7797"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro Matias","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064251517","display_name":"Maryam Abbasi","orcid":"https://orcid.org/0000-0002-9011-0734"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Maryam Abbasi","raw_affiliation_strings":["CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISUC, Department of Informatics Engineering, University of Coimbra, Polo II, 3030-290, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"CISUC, Dept. of Informatics Engineering, Univ. of Coimbra, Coimbra, Portugal#TAB#","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079044789","display_name":"Miguel Pinheiro","orcid":"https://orcid.org/0000-0002-6601-7513"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Miguel Pinheiro","raw_affiliation_strings":["School of Medicine, University of St, Andrews, North Haugh, KY16 9TF St, Andrews, UK. mmp2@st-andrews.ac.uk","School of Medicine, University of St Andrews, North Haugh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, University of St, Andrews, North Haugh, KY16 9TF St, Andrews, UK. mmp2@st-andrews.ac.uk","institution_ids":["https://openalex.org/I16835326"]},{"raw_affiliation_string":"School of Medicine, University of St Andrews, North Haugh, UK","institution_ids":["https://openalex.org/I16835326"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5079044789"],"corresponding_institution_ids":["https://openalex.org/I16835326"],"apc_list":{"value":2040,"currency":"USD","value_usd":2040},"apc_paid":{"value":2040,"currency":"USD","value_usd":2040},"fwci":0.3896,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61266291,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"9","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7144834995269775},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6132546663284302},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.597271203994751},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5315800905227661},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4798397719860077},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46145662665367126},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4030669927597046},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08250388503074646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0791986882686615}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7144834995269775},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6132546663284302},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.597271203994751},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5315800905227661},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4798397719860077},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46145662665367126},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4030669927597046},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08250388503074646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0791986882686615},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1751-0473-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-2","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-9-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:24401750","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24401750","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2902372","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3917701","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:research-repository.st-andrews.ac.uk:10023/4437","is_oa":true,"landing_page_url":"https://hdl.handle.net/10023/4437","pdf_url":null,"source":{"id":"https://openalex.org/S4306400230","display_name":"St Andrews Research Repository (St Andrews Research Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16835326","host_organization_name":"University of St Andrews","host_organization_lineage":["https://openalex.org/I16835326"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-2","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-9-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109787320.pdf","grobid_xml":"https://content.openalex.org/works/W2109787320.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1970424517","https://openalex.org/W1990061958","https://openalex.org/W2029195137","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2094589769","https://openalex.org/W2127253596","https://openalex.org/W2151384837","https://openalex.org/W2162932472","https://openalex.org/W2461892734","https://openalex.org/W2610179052","https://openalex.org/W2615258659","https://openalex.org/W4302557773"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W2141411672"],"abstract_inverted_index":{":":[0],"Multiobjective":[1],"sequence":[2,58],"alignment":[3],"brings":[4],"the":[5,15,35,38],"advantage":[6],"of":[7,11,27,34],"providing":[8],"a":[9,31,43],"set":[10],"alignments":[12,29],"that":[13,46],"represent":[14],"trade-off":[16],"between":[17,37],"performing":[18],"insertion/deletions":[19],"and":[20,51],"matching":[21],"symbols":[22],"from":[23],"both":[24],"sequences.":[25,39],"Each":[26],"these":[28],"provide":[30],"potential":[32],"explanation":[33],"relationship":[36],"We":[40],"introduce":[41],"MOSAL,":[42],"software":[44],"tool":[45],"provides":[47],"an":[48,52],"open-source":[49],"implementation":[50],"on-line":[53],"application":[54],"for":[55],"multiobjective":[56],"pairwise":[57],"alignment.":[59]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
