{"id":"https://openalex.org/W2098141474","doi":"https://doi.org/10.1186/1751-0473-9-14","title":"Second generation registry framework","display_name":"Second generation registry framework","publication_year":2014,"publication_date":"2014-06-20","ids":{"openalex":"https://openalex.org/W2098141474","doi":"https://doi.org/10.1186/1751-0473-9-14","mag":"2098141474","pmid":"https://pubmed.ncbi.nlm.nih.gov/24982690"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-9-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-14","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-9-14","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-9-14","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044207304","display_name":"M. Bellgard","orcid":"https://orcid.org/0000-0002-6303-9469"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Matthew I Bellgard","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005410267","display_name":"Lee Render","orcid":"https://orcid.org/0000-0003-3870-425X"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lee Render","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","Centre for Comparative Genomics Murdoch University Murdoch Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics Murdoch University Murdoch Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028396209","display_name":"Maciej Radochonski","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Maciej Radochonski","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","Centre for Comparative Genomics Murdoch University Murdoch Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics Murdoch University Murdoch Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042391054","display_name":"Adam Hunter","orcid":"https://orcid.org/0000-0002-9458-606X"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Adam Hunter","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","Centre for Comparative Genomics Murdoch University Murdoch Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Murdoch, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics Murdoch University Murdoch Australia","institution_ids":["https://openalex.org/I176790772"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044207304"],"corresponding_institution_ids":["https://openalex.org/I176790772"],"apc_list":null,"apc_paid":null,"fwci":5.6787,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.9548175,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.4027999937534332,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.4027999937534332,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.1062999963760376,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06260000169277191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workgroup","display_name":"Workgroup","score":0.8165147304534912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7002882361412048},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5270830988883972},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47827279567718506},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.47330442070961},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.471757709980011},{"id":"https://openalex.org/keywords/disease-registry","display_name":"Disease registry","score":0.4278353452682495},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4251287579536438},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.258411705493927},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21532240509986877},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.12807822227478027}],"concepts":[{"id":"https://openalex.org/C95423123","wikidata":"https://www.wikidata.org/wiki/Q622178","display_name":"Workgroup","level":2,"score":0.8165147304534912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7002882361412048},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5270830988883972},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47827279567718506},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.47330442070961},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.471757709980011},{"id":"https://openalex.org/C2778959093","wikidata":"https://www.wikidata.org/wiki/Q5282128","display_name":"Disease registry","level":3,"score":0.4278353452682495},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4251287579536438},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.258411705493927},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21532240509986877},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.12807822227478027},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1751-0473-9-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-14","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-9-14","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:24982690","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24982690","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:researchrepository.murdoch.edu.au:22931","is_oa":false,"landing_page_url":"http://researchrepository.murdoch.edu.au/id/eprint/22931/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400274","display_name":"Murdoch Research Repository (Murdoch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176790772","host_organization_name":"Murdoch University","host_organization_lineage":["https://openalex.org/I176790772"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"  Bellgard, M.I. &lt;http://researchrepository.murdoch.edu.au/view/author/Bellgard, Matthew.html&gt;, Render, L. &lt;http://researchrepository.murdoch.edu.au/view/author/Render, Lee.html&gt;, Radochonski, M. &lt;http://researchrepository.murdoch.edu.au/view/author/Radochonski, Maciej.html&gt; and Hunter, A. &lt;http://researchrepository.murdoch.edu.au/view/author/Hunter, Adam.html&gt;   (2014)  Second generation registry framework.   Source Code for Biology and Medicine, 9  (1).    ","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.qut.edu.au:125433","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"Contribution to Journal"},{"id":"pmh:oai:pubmedcentral.nih.gov:4075501","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4075501","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-9-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-9-14","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-9-14","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8299999833106995,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G4832689538","display_name":null,"funder_award_id":"APP1055319","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8538723892","display_name":null,"funder_award_id":"EU FP7","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098141474.pdf","grobid_xml":"https://content.openalex.org/works/W2098141474.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1966909822","https://openalex.org/W2047895996","https://openalex.org/W2096753684","https://openalex.org/W2138193360","https://openalex.org/W2141464042","https://openalex.org/W2162935122","https://openalex.org/W2174109873"],"related_works":["https://openalex.org/W624647371","https://openalex.org/W2168235705","https://openalex.org/W3149960746","https://openalex.org/W3130903168","https://openalex.org/W4281392303","https://openalex.org/W2096268347","https://openalex.org/W2156026376","https://openalex.org/W385597202","https://openalex.org/W167225959","https://openalex.org/W1531252510"],"abstract_inverted_index":{"BACKGROUND:":[0],"Information":[1],"management":[2,37],"systems":[3,38],"are":[4,40,87],"essential":[5],"to":[6,34,42,68,89,93,124,141,162,204,256,260,275,315],"capture":[7],"data":[8,47,64,102,216,234,258,265,273,278],"be":[9,228,238,254,286],"it":[10,152,200],"for":[11,106,116,153,218],"public":[12,25],"health":[13],"and":[14,21,44,53,62,104,119,134,150,224,250,264,320,322],"human":[15],"disease,":[16],"sustainable":[17],"agriculture,":[18],"or":[19,159,207],"plant":[20],"animal":[22],"biosecurity.":[23],"In":[24],"health,":[26],"the":[27,77,97,100,243,269,277,292,298],"term":[28],"patient":[29,56,70,108,146,209,303,316],"registry":[30,128,135,147,179,188,202,317,328],"is":[31,76,114,122,195,311],"often":[32],"used":[33,41],"describe":[35],"information":[36],"that":[39,130,296],"record":[43],"track":[45],"phenotypic":[46,223],"of":[48,55,80,222,242,271,302],"patients.":[49],"Appropriate":[50],"design,":[51,318],"implementation":[52,319],"deployment":[54,321],"registries":[57,210],"enables":[58,297],"rapid":[59],"decision":[60],"making":[61],"ongoing":[63,117],"mining":[65],"ultimately":[66],"leading":[67],"improved":[69],"outcomes.":[71],"A":[72],"major":[73],"bottleneck":[74],"encountered":[75],"static":[78],"nature":[79],"these":[81],"registries.":[82,245,304],"That":[83],"is,":[84],"software":[85,111,165,212],"developers":[86],"required":[88,101,115],"work":[90],"with":[91,157],"stakeholders":[92],"determine":[94],"requirements,":[95],"design":[96],"system,":[98],"implement":[99],"fields":[103],"functionality":[105],"each":[107,257],"registry.":[109],"Additionally,":[110],"developer":[112,166,213],"time":[113],"maintenance":[118],"customisation.":[120],"It":[121],"desirable":[123],"deploy":[125],"a":[126,144,164,196,219,312,323],"sophisticated":[127],"framework":[129,180,189],"can":[131,227,236,253],"allow":[132],"scientists":[133],"curators":[136],"possessing":[137],"standard":[138],"computing":[139],"skills":[140],"dynamically":[142],"construct":[143,205],"complete":[145],"from":[148],"scratch":[149],"customise":[151],"their":[154],"specific":[155],"needs":[156],"little":[158],"no":[160],"need":[161],"engage":[163],"at":[167,230],"any":[168,231,241],"stage.":[169],"RESULTS:":[170],"This":[171,191],"paper":[172],"introduces":[173],"our":[174,184],"second":[175,192,293,308],"generation":[176,193,294,309],"open":[177],"source":[178],"which":[181],"builds":[182],"on":[183,282,326],"previous":[185],"rare":[186],"disease":[187],"(RDRF).":[190],"RDRF":[194,295,310],"new":[197],"approach":[198,314],"as":[199],"empowers":[201],"administrators":[203],"one":[206],"more":[208],"without":[211],"effort.":[214],"New":[215],"elements":[217,235,274],"diverse":[220],"range":[221],"genotypic":[225],"measurements":[226],"defined":[229],"time.":[232],"Defined":[233],"then":[237],"utilised":[239],"in":[240],"created":[244],"Fine":[246],"grained,":[247],"multi-level":[248],"user":[249],"workgroup":[251],"access":[252,263],"applied":[255],"element":[259,279],"ensure":[261],"appropriate":[262],"privacy.":[266],"We":[267,290,305],"introduce":[268,291],"concept":[270],"derived":[272],"assist":[276],"standards":[280],"communities":[281],"how":[283],"they":[284],"might":[285],"best":[287],"categorised.":[288],"CONCLUSIONS:":[289],"user-driven":[299],"dynamic":[300],"creation":[301],"believe":[306],"this":[307],"novel":[313],"significant":[324],"advance":[325],"existing":[327],"systems.":[329]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
