{"id":"https://openalex.org/W2118860683","doi":"https://doi.org/10.1186/1751-0473-8-2","title":"Knowledge Driven Variable Selection (KDVS) \u2013 a new approach to enrichment analysis of gene signatures obtained from high\u2013throughput data","display_name":"Knowledge Driven Variable Selection (KDVS) \u2013 a new approach to enrichment analysis of gene signatures obtained from high\u2013throughput data","publication_year":2013,"publication_date":"2013-01-09","ids":{"openalex":"https://openalex.org/W2118860683","doi":"https://doi.org/10.1186/1751-0473-8-2","mag":"2118860683","pmid":"https://pubmed.ncbi.nlm.nih.gov/23302187"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-8-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-8-2","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-8-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-8-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089324176","display_name":"Grzegorz Zycinski","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125647","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Genova","ror":"https://ror.org/02v89pq06","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210125647"]},{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Grzegorz Zycinski","raw_affiliation_strings":["DIBRIS, University of Genoa, via Dodecaneso 35, I-16146 Genova, Italy. grzegorz.zycinski@unige.it","DIBRIS - University of Genoa, Genova, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIBRIS, University of Genoa, via Dodecaneso 35, I-16146 Genova, Italy. grzegorz.zycinski@unige.it","institution_ids":["https://openalex.org/I83816512","https://openalex.org/I4210125647"]},{"raw_affiliation_string":"DIBRIS - University of Genoa, Genova, Italy#TAB#","institution_ids":["https://openalex.org/I83816512"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003964675","display_name":"Annalisa Barla","orcid":"https://orcid.org/0000-0002-3436-035X"},"institutions":[{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Annalisa Barla","raw_affiliation_strings":["DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","DIBRIS - University of Genoa, Genova, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","institution_ids":["https://openalex.org/I83816512"]},{"raw_affiliation_string":"DIBRIS - University of Genoa, Genova, Italy#TAB#","institution_ids":["https://openalex.org/I83816512"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011252240","display_name":"Margherita Squillario","orcid":"https://orcid.org/0000-0002-6612-3383"},"institutions":[{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Margherita Squillario","raw_affiliation_strings":["DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","DIBRIS - University of Genoa, Genova, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","institution_ids":["https://openalex.org/I83816512"]},{"raw_affiliation_string":"DIBRIS - University of Genoa, Genova, Italy#TAB#","institution_ids":["https://openalex.org/I83816512"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008327028","display_name":"Tiziana Sanavia","orcid":"https://orcid.org/0000-0003-3288-0631"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tiziana Sanavia","raw_affiliation_strings":["Information Engineering Department, University of Padova, via Gradenigo 6A, I-35131, Padova, Italy","Inf. Eng. Dept., Univ. of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Engineering Department, University of Padova, via Gradenigo 6A, I-35131, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Inf. Eng. Dept., Univ. of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077821068","display_name":"Barbara Di Camillo","orcid":"https://orcid.org/0000-0001-8415-4688"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Barbara Di Camillo","raw_affiliation_strings":["Information Engineering Department, University of Padova, via Gradenigo 6A, I-35131, Padova, Italy","Inf. Eng. Dept., Univ. of Padova, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Engineering Department, University of Padova, via Gradenigo 6A, I-35131, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Inf. Eng. Dept., Univ. of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036620304","display_name":"Alessandro Verri","orcid":"https://orcid.org/0000-0001-9777-9986"},"institutions":[{"id":"https://openalex.org/I83816512","display_name":"University of Genoa","ror":"https://ror.org/0107c5v14","country_code":"IT","type":"education","lineage":["https://openalex.org/I83816512"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Verri","raw_affiliation_strings":["DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","DIBRIS - University of Genoa, Genova, Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIBRIS, University of Genoa, via Dodecaneso 35, I-16146, Genova, Italy","institution_ids":["https://openalex.org/I83816512"]},{"raw_affiliation_string":"DIBRIS - University of Genoa, Genova, Italy#TAB#","institution_ids":["https://openalex.org/I83816512"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4488,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.66459492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"8","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8090000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8090000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13510000705718994,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.015399999916553497,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.712058961391449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.691925048828125},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6303492188453674},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5977131128311157},{"id":"https://openalex.org/keywords/viewpoints","display_name":"Viewpoints","score":0.5268736481666565},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4950369894504547},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4486883580684662},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44468581676483154},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.437531977891922},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.42251208424568176},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38427969813346863},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3497704267501831},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24087205529212952},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16779500246047974},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1654476821422577},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13561996817588806}],"concepts":[{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.712058961391449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.691925048828125},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6303492188453674},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5977131128311157},{"id":"https://openalex.org/C2776035091","wikidata":"https://www.wikidata.org/wiki/Q7928819","display_name":"Viewpoints","level":2,"score":0.5268736481666565},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4950369894504547},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4486883580684662},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44468581676483154},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.437531977891922},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.42251208424568176},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38427969813346863},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3497704267501831},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24087205529212952},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16779500246047974},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1654476821422577},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13561996817588806},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1751-0473-8-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-8-2","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-8-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:23302187","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23302187","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:europepmc.org:2604253","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3605163","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unige.it:11567/553540","is_oa":false,"landing_page_url":"http://hdl.handle.net/11567/553540","pdf_url":null,"source":{"id":"https://openalex.org/S4377196291","display_name":"CINECA IRIS Institutial Research Information System (University of Genoa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I83816512","host_organization_name":"University of Genoa","host_organization_lineage":["https://openalex.org/I83816512"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unito.it:2318/1727727","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/1727727","pdf_url":null,"source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/2547482","is_oa":true,"landing_page_url":"http://hdl.handle.net/11577/2547482","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-8-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-8-2","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-8-2","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118860683.pdf","grobid_xml":"https://content.openalex.org/works/W2118860683.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W250061445","https://openalex.org/W374166679","https://openalex.org/W629442135","https://openalex.org/W1480400193","https://openalex.org/W1554944419","https://openalex.org/W1842847600","https://openalex.org/W1906461790","https://openalex.org/W1965256295","https://openalex.org/W1965843937","https://openalex.org/W1967053372","https://openalex.org/W1968445925","https://openalex.org/W1979978607","https://openalex.org/W1980548655","https://openalex.org/W1989160450","https://openalex.org/W1990306575","https://openalex.org/W1993286543","https://openalex.org/W1997453445","https://openalex.org/W1998767819","https://openalex.org/W1999132491","https://openalex.org/W2006921248","https://openalex.org/W2010104618","https://openalex.org/W2017337590","https://openalex.org/W2018700587","https://openalex.org/W2020541351","https://openalex.org/W2023313804","https://openalex.org/W2026743036","https://openalex.org/W2027895157","https://openalex.org/W2051535447","https://openalex.org/W2061680337","https://openalex.org/W2066325577","https://openalex.org/W2074920675","https://openalex.org/W2078284062","https://openalex.org/W2084125429","https://openalex.org/W2099364528","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2108426942","https://openalex.org/W2109220814","https://openalex.org/W2109363337","https://openalex.org/W2116063398","https://openalex.org/W2120680184","https://openalex.org/W2123106337","https://openalex.org/W2127563440","https://openalex.org/W2129815183","https://openalex.org/W2130410032","https://openalex.org/W2133210805","https://openalex.org/W2133465414","https://openalex.org/W2134752341","https://openalex.org/W2137317896","https://openalex.org/W2140192325","https://openalex.org/W2143426320","https://openalex.org/W2143950810","https://openalex.org/W2145813479","https://openalex.org/W2147468287","https://openalex.org/W2154947819","https://openalex.org/W2157503003","https://openalex.org/W2158240093","https://openalex.org/W2160697532","https://openalex.org/W2168466769","https://openalex.org/W2240167045","https://openalex.org/W2402036820","https://openalex.org/W2602645338","https://openalex.org/W2787894218","https://openalex.org/W2915482286","https://openalex.org/W4238734921","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2372572311","https://openalex.org/W160116885","https://openalex.org/W2065035599","https://openalex.org/W2349269976","https://openalex.org/W2059929079","https://openalex.org/W2392204653","https://openalex.org/W2625512991","https://openalex.org/W2376789048","https://openalex.org/W2382078898","https://openalex.org/W2073385028"],"abstract_inverted_index":{"BACKGROUND:":[0],"High-throughput":[1],"(HT)":[2],"technologies":[3],"provide":[4,49],"huge":[5],"amount":[6],"of":[7,32,53,113,131,134,271,284,293,299,321,332],"gene":[8,35,75,104,135,226],"expression":[9,105,174],"data":[10,171,175],"that":[11,82,140,163,277],"can":[12,337],"be":[13,338],"used":[14,26,127],"to":[15,38,110,180,187,190,254,267,303,344],"identify":[16],"biomarkers":[17],"useful":[18],"in":[19,116,128,169,306],"the":[20,54,84,129,132,215,222,245,249,252,255,259,269,272,282,318,330],"clinical":[21],"practice.":[22],"The":[23,173],"most":[24,201],"frequently":[25],"approaches":[27],"first":[28],"select":[29],"a":[30,50,59,92,161,165,206,240,307,341],"set":[31],"genes":[33,56],"(i.e.":[34],"signature)":[36],"able":[37],"characterize":[39],"differences":[40],"between":[41,100],"two":[42,237],"or":[43,144,210],"more":[44],"phenotypical":[45],"conditions,":[46],"and":[47,103,119,189,195,228,258,309],"then":[48],"functional":[51,229],"assessment":[52,130,230],"selected":[55],"with":[57,71,288],"an":[58],"posteriori":[60,93],"enrichment":[61,94],"analysis,":[62],"based":[63,97],"on":[64,98],"biological":[65,101,117,138,167,196,216,256,286],"knowledge.":[66],"However,":[67],"this":[68],"approach":[69,224,336],"comes":[70],"some":[72],"drawbacks.":[73],"First,":[74],"selection":[76,227,283],"procedure":[77],"often":[78],"requires":[79,145],"tunable":[80,146],"parameters":[81,147],"affect":[83],"outcome,":[85],"typically":[86,126],"producing":[87],"many":[88],"false":[89],"hits.":[90],"Second,":[91],"analysis":[95],"is":[96,108,125,141,177,314],"mapping":[99,124,253],"concepts":[102],"measurements,":[106],"which":[107],"hard":[109],"compute":[111],"because":[112],"constant":[114],"changes":[115],"knowledge":[118,168],"genome":[120],"analysis.":[121,172],"Third,":[122],"such":[123],"coverage":[133],"signature":[136,260],"by":[137,317],"concepts,":[139,257],"either":[142],"score-based":[143],"as":[148,340],"well,":[149],"limiting":[150],"its":[151],"power.":[152],"RESULTS:":[153],"We":[154,262,275],"present":[155,263],"Knowledge":[156],"Driven":[157],"Variable":[158],"Selection":[159],"(KDVS),":[160],"framework":[162],"uses":[164],"priori":[166,207],"HT":[170],"matrix":[176],"transformed,":[178],"according":[179],"prior":[181],"knowledge,":[182],"into":[183,239],"smaller":[184],"matrices,":[185],"easier":[186],"analyze":[188],"interpret":[191],"from":[192,221,248],"both":[193],"computational":[194],"viewpoints.":[197],"Therefore":[198],"KDVS,":[199],"unlike":[200],"approaches,":[202],"does":[203],"not":[204,279],"exclude":[205],"any":[208],"function":[209],"process":[211],"potentially":[212],"relevant":[213],"for":[214],"question":[217],"under":[218],"investigation.":[219],"Differently":[220],"standard":[223],"where":[225],"are":[231],"applied":[232],"independently,":[233],"KDVS":[234,278,300,335],"embeds":[235],"these":[236],"steps":[238],"unified":[241],"statistical":[242],"framework,":[243],"decreasing":[244],"variability":[246],"derived":[247],"threshold-dependent":[250],"selection,":[251],"coverage.":[261],"three":[264],"case":[265],"studies":[266],"assess":[268],"usefulness":[270],"method.":[273],"CONCLUSIONS:":[274],"showed":[276],"only":[280],"enables":[281],"known":[285],"functionalities":[287],"accuracy,":[289],"but":[290],"also":[291],"identification":[292],"new":[294],"ones.":[295],"An":[296],"efficient":[297],"implementation":[298],"was":[301],"devised":[302],"obtain":[304],"results":[305],"fast":[308],"robust":[310],"way.":[311],"Computing":[312],"time":[313],"drastically":[315],"reduced":[316],"effective":[319],"use":[320],"distributed":[322],"resources.":[323],"Finally,":[324],"integrated":[325],"visualization":[326],"techniques":[327],"immediately":[328],"increase":[329],"interpretability":[331],"results.":[333],"Overall,":[334],"considered":[339],"viable":[342],"alternative":[343],"enrichment-based":[345],"approaches.":[346]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
