{"id":"https://openalex.org/W2138193360","doi":"https://doi.org/10.1186/1751-0473-7-1","title":"Yabi: An online research environment for grid, high performance and cloud computing","display_name":"Yabi: An online research environment for grid, high performance and cloud computing","publication_year":2012,"publication_date":"2012-02-15","ids":{"openalex":"https://openalex.org/W2138193360","doi":"https://doi.org/10.1186/1751-0473-7-1","mag":"2138193360","pmid":"https://pubmed.ncbi.nlm.nih.gov/22333270"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-7-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-7-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-7-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-7-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042391054","display_name":"Adam Hunter","orcid":"https://orcid.org/0000-0002-9458-606X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Adam A Hunter","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch, Western Australia, 6150. mbellgard@ccg.murdoch.edu.au","Centre for Comparative Genomics, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Western Australia, 6150. mbellgard@ccg.murdoch.edu.au","institution_ids":[]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077518549","display_name":"A Macgregor","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew B Macgregor","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","Centre for Comparative Genomics, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010111965","display_name":"Tam\u00e1s Szab\u00f3","orcid":"https://orcid.org/0000-0001-9422-8142"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tamas O Szabo","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","Centre for Comparative Genomics, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003388517","display_name":"Crispin A Wellington","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Crispin A Wellington","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","Centre for Comparative Genomics, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044207304","display_name":"M. Bellgard","orcid":"https://orcid.org/0000-0002-6303-9469"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Matthew I Bellgard","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","Centre for Comparative Genomics, Murdoch, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, 6150, Western Australia, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch, Australia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5042391054"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":38.3977,"has_fulltext":true,"cited_by_count":141,"citation_normalized_percentile":{"value":0.99730002,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8809912204742432},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.758857011795044},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6064929962158203},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5647001266479492},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.5252618193626404},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.4769003391265869},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.4663013517856598},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4540059566497803},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.41989046335220337},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.410480260848999},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39620620012283325},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3746950626373291},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3230982720851898}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8809912204742432},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.758857011795044},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6064929962158203},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5647001266479492},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.5252618193626404},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.4769003391265869},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.4663013517856598},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4540059566497803},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.41989046335220337},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.410480260848999},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39620620012283325},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3746950626373291},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3230982720851898},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1751-0473-7-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-7-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-7-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:22333270","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22333270","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:125436","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/125436/1/Yabi_1751-0473-7-1.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"Contribution to Journal"},{"id":"pmh:oai:researchrepository.murdoch.edu.au:7974","is_oa":false,"landing_page_url":"http://researchrepository.murdoch.edu.au/id/eprint/7974/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400274","display_name":"Murdoch Research Repository (Murdoch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176790772","host_organization_name":"Murdoch University","host_organization_lineage":["https://openalex.org/I176790772"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"  Hunter, A.A. &lt;http://researchrepository.murdoch.edu.au/view/author/Hunter, Adam.html&gt;, Macgregor, A.B. &lt;http://researchrepository.murdoch.edu.au/view/author/Macgregor, Andrew.html&gt;, Szabo, T. &lt;http://researchrepository.murdoch.edu.au/view/author/Szabo, Tamas.html&gt;, Wellington, C. &lt;http://researchrepository.murdoch.edu.au/view/author/Wellington, Crispin.html&gt; and Bellgard, M.I. &lt;http://researchrepository.murdoch.edu.au/view/author/Bellgard, Matthew.html&gt;   (2012)  Yabi: An online research environment for grid, high performance and cloud computing.   Source Code for Biology and Medicine, 7  (1).   p. 1.  ","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2307535","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3298538","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-7-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-7-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-7-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320312168","display_name":"Australian National Data Service","ror":"https://ror.org/038sjwq14"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138193360.pdf","grobid_xml":"https://content.openalex.org/works/W2138193360.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W360473203","https://openalex.org/W1647671624","https://openalex.org/W1799346112","https://openalex.org/W1963653120","https://openalex.org/W1971676632","https://openalex.org/W1981593008","https://openalex.org/W1991570511","https://openalex.org/W1992102171","https://openalex.org/W1996423252","https://openalex.org/W1996902131","https://openalex.org/W2001291669","https://openalex.org/W2015556811","https://openalex.org/W2076226183","https://openalex.org/W2103112501","https://openalex.org/W2111996486","https://openalex.org/W2123663722","https://openalex.org/W2129666400","https://openalex.org/W2132899146","https://openalex.org/W2134301172","https://openalex.org/W2135766717","https://openalex.org/W2137281302","https://openalex.org/W2137653635","https://openalex.org/W2150934173","https://openalex.org/W2161645441","https://openalex.org/W2166187656","https://openalex.org/W2172143128","https://openalex.org/W2218649964","https://openalex.org/W2222519925","https://openalex.org/W2972770296","https://openalex.org/W4237189365"],"related_works":["https://openalex.org/W3023169329","https://openalex.org/W4389470870","https://openalex.org/W2782165897","https://openalex.org/W1582950852","https://openalex.org/W4300438041","https://openalex.org/W2054104202","https://openalex.org/W2139703748","https://openalex.org/W2761254753","https://openalex.org/W1024825291","https://openalex.org/W2188981919"],"abstract_inverted_index":{"The":[0],"Yabi":[1,46],"system":[2],"encapsulates":[3],"considered":[4],"design":[5],"of":[6],"both":[7],"execution":[8],"and":[9,25,51,56],"data":[10],"models,":[11],"while":[12],"abstracting":[13],"technical":[14],"details":[15],"away":[16],"from":[17],"users":[18],"who":[19],"are":[20],"not":[21],"skilled":[22],"in":[23,49],"HPC":[24],"providing":[26],"an":[27],"intuitive":[28],"drag-and-drop":[29],"scalable":[30],"web-based":[31],"workflow":[32],"environment":[33],"where":[34],"the":[35],"same":[36],"tools":[37],"can":[38],"also":[39],"be":[40],"accessed":[41],"via":[42],"a":[43],"command":[44],"line.":[45],"is":[47,57],"currently":[48],"use":[50],"deployed":[52],"at":[53,59],"multiple":[54],"institutions":[55],"available":[58],"http://ccg.murdoch.edu.au/yabi.":[60]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":25},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
