{"id":"https://openalex.org/W2115236177","doi":"https://doi.org/10.1186/1751-0473-6-8","title":"KBWS: an EMBOSS associated package for accessing bioinformatics web services","display_name":"KBWS: an EMBOSS associated package for accessing bioinformatics web services","publication_year":2011,"publication_date":"2011-04-29","ids":{"openalex":"https://openalex.org/W2115236177","doi":"https://doi.org/10.1186/1751-0473-6-8","mag":"2115236177","pmid":"https://pubmed.ncbi.nlm.nih.gov/21529350"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-6-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-6-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-6-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063773615","display_name":"Kazuki Oshita","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuki Oshita","raw_affiliation_strings":["1Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan. gaou@sfc.keio.ac.jp","Institute for Advanced Biosciences, Keio University, Fujisawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan. gaou@sfc.keio.ac.jp","institution_ids":["https://openalex.org/I4210141715"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069148446","display_name":"Kazuharu Arakawa","orcid":"https://orcid.org/0000-0002-2893-4919"},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kazuharu Arakawa","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","Institute for Advanced Biosciences, Keio University, Fujisawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaru Tomita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","Keio Univ"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]},{"raw_affiliation_string":"Keio Univ","institution_ids":["https://openalex.org/I203951103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5069148446"],"corresponding_institution_ids":["https://openalex.org/I4210141715"],"apc_list":{"value":2040,"currency":"USD","value_usd":2040},"apc_paid":{"value":2040,"currency":"USD","value_usd":2040},"fwci":1.4315,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.87861525,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8035302758216858},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.634192705154419},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.626646876335144},{"id":"https://openalex.org/keywords/ws-i-basic-profile","display_name":"WS-I Basic Profile","score":0.542222797870636},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.54056316614151},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5048204064369202},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.499194860458374},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.43171849846839905},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34520745277404785},{"id":"https://openalex.org/keywords/web-development","display_name":"Web development","score":0.18661028146743774},{"id":"https://openalex.org/keywords/web-application-security","display_name":"Web application security","score":0.09390097856521606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8035302758216858},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.634192705154419},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.626646876335144},{"id":"https://openalex.org/C38434365","wikidata":"https://www.wikidata.org/wiki/Q1066916","display_name":"WS-I Basic Profile","level":5,"score":0.542222797870636},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.54056316614151},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5048204064369202},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.499194860458374},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.43171849846839905},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34520745277404785},{"id":"https://openalex.org/C79373723","wikidata":"https://www.wikidata.org/wiki/Q386275","display_name":"Web development","level":3,"score":0.18661028146743774},{"id":"https://openalex.org/C59241245","wikidata":"https://www.wikidata.org/wiki/Q4781497","display_name":"Web application security","level":4,"score":0.09390097856521606}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1751-0473-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-6-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-6-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:21529350","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21529350","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:0f829a7b9a034f029481d9177a93123c","is_oa":false,"landing_page_url":"https://doaj.org/article/0f829a7b9a034f029481d9177a93123c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 6, Iss 1, p 8 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3101651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3101651","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-6-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-6-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-6-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G3859906220","display_name":"Multi-omics study to elucidate the molecular mechanism of anhydrobiosis in tardigrade Ramazzottius varieornatus","funder_award_id":"22681029","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115236177.pdf","grobid_xml":"https://content.openalex.org/works/W2115236177.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1996423252","https://openalex.org/W2004566585","https://openalex.org/W2065783627","https://openalex.org/W2071286514","https://openalex.org/W2087383805","https://openalex.org/W2100434585","https://openalex.org/W2105637701","https://openalex.org/W2107934935","https://openalex.org/W2113182242","https://openalex.org/W2137550342","https://openalex.org/W2148300596","https://openalex.org/W2156206665","https://openalex.org/W2160943260","https://openalex.org/W2168103533","https://openalex.org/W2169826929","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1595475086","https://openalex.org/W1965927827","https://openalex.org/W4268596","https://openalex.org/W100127945","https://openalex.org/W2920199510","https://openalex.org/W1182638884","https://openalex.org/W4200253686","https://openalex.org/W2490848162","https://openalex.org/W2372204199","https://openalex.org/W2626507988"],"abstract_inverted_index":{"The":[0,16],"availability":[1],"of":[2,14,23,29,50,62,75,96,110,115,121,124],"bioinformatics":[3,69],"web-based":[4],"services":[5,25,52,71,150],"is":[6,19,135],"rapidly":[7],"proliferating,":[8],"for":[9,66,90,94],"their":[10],"interoperability":[11,93],"and":[12,31,41,92,98,112,119,126,141,162],"ease":[13],"use.":[15],"next":[17],"challenge":[18],"in":[20,26,72,133,152],"the":[21,27,38,48,73,102,148],"integration":[22],"these":[24],"form":[28,74],"workflows,":[30],"several":[32],"projects":[33],"are":[34],"already":[35],"underway,":[36],"standardizing":[37],"syntax,":[39],"semantics,":[40],"user":[42],"interfaces.":[43],"In":[44],"order":[45],"to":[46],"deploy":[47],"advantages":[49],"web":[51,70],"with":[53],"locally":[54],"installed":[55],"tools,":[56,97],"here":[57],"we":[58],"describe":[59],"a":[60],"collection":[61],"proxy":[63],"client":[64],"tools":[65],"42":[67],"major":[68],"European":[76],"Molecular":[77],"Biology":[78],"Open":[79],"Software":[80],"Suite":[81],"(EMBOSS)":[82],"UNIX":[83],"command-line":[84],"tools.":[85],"EMBOSS":[86],"provides":[87],"sophisticated":[88],"means":[89],"discoverability":[91],"hundreds":[95],"our":[99],"package,":[100],"named":[101],"Keio":[103],"Bioinformatics":[104],"Web":[105],"Service":[106],"(KBWS),":[107],"adds":[108],"functionalities":[109],"local":[111],"multiple":[113],"alignment":[114],"sequences,":[116],"phylogenetic":[117],"analyses,":[118],"prediction":[120],"cellular":[122],"localization":[123],"proteins":[125],"RNA":[127],"secondary":[128],"structures.":[129],"This":[130],"software":[131],"implemented":[132,151],"C":[134],"available":[136],"under":[137],"GPL":[138],"from":[139],"http://www.g-language.org/kbws/":[140],"GitHub":[142],"repository":[143],"http://github.com/cory-ko/KBWS.":[144],"Users":[145],"can":[146],"utilize":[147],"SOAP":[149],"Perl":[153],"directly":[154],"via":[155],"WSDL":[156],"file":[157],"at":[158],"http://soap.g-language.org/kbws.wsdl":[159],"(RPC":[160],"Encoded)":[161],"http://soap.g-language.org/kbws_dl.wsdl":[163],"(Document/literal).":[164]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
