{"id":"https://openalex.org/W2123528737","doi":"https://doi.org/10.1186/1751-0473-5-3","title":"MADAM - An open source meta-analysis toolbox for R and Bioconductor","display_name":"MADAM - An open source meta-analysis toolbox for R and Bioconductor","publication_year":2010,"publication_date":"2010-03-01","ids":{"openalex":"https://openalex.org/W2123528737","doi":"https://doi.org/10.1186/1751-0473-5-3","mag":"2123528737","pmid":"https://pubmed.ncbi.nlm.nih.gov/20193058"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-5-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010613268","display_name":"Karl Kugler","orcid":"https://orcid.org/0000-0003-2342-7472"},"institutions":[{"id":"https://openalex.org/I4210114246","display_name":"UMIT - Private Universit\u00e4t f\u00fcr Gesundheitswissenschaften, Medizinische Informatik und Technik","ror":"https://ror.org/02d0kps43","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210114246"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Karl G Kugler","raw_affiliation_strings":["Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria. karl.kugler@umit.at","Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria. karl.kugler@umit.at","institution_ids":["https://openalex.org/I4210114246"]},{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria","institution_ids":["https://openalex.org/I4210114246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026317296","display_name":"Laurin A. J. Mueller","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114246","display_name":"UMIT - Private Universit\u00e4t f\u00fcr Gesundheitswissenschaften, Medizinische Informatik und Technik","ror":"https://ror.org/02d0kps43","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210114246"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Laurin AJ Mueller","raw_affiliation_strings":["Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria","Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria","institution_ids":["https://openalex.org/I4210114246"]},{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria","institution_ids":["https://openalex.org/I4210114246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111907321","display_name":"Armin Graber","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114246","display_name":"UMIT - Private Universit\u00e4t f\u00fcr Gesundheitswissenschaften, Medizinische Informatik und Technik","ror":"https://ror.org/02d0kps43","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210114246"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Armin Graber","raw_affiliation_strings":["Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria","Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, 6060, Austria","institution_ids":["https://openalex.org/I4210114246"]},{"raw_affiliation_string":"Institute for Bioinformatics and Translational Research, UMIT, Eduard Walln\u00f6fer-Zentrum 1, Hall in Tirol, Austria","institution_ids":["https://openalex.org/I4210114246"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5010613268"],"corresponding_institution_ids":["https://openalex.org/I4210114246"],"apc_list":null,"apc_paid":null,"fwci":2.7647,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.92222433,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.18320000171661377,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.18320000171661377,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.1339000016450882,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.06989999860525131,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8256827592849731},{"id":"https://openalex.org/keywords/madam","display_name":"Madam","score":0.8172942399978638},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5439907908439636},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5164797306060791},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3788178563117981},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37171265482902527},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20508873462677002}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8256827592849731},{"id":"https://openalex.org/C2780127627","wikidata":"https://www.wikidata.org/wiki/Q17146837","display_name":"Madam","level":2,"score":0.8172942399978638},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5439907908439636},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5164797306060791},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3788178563117981},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37171265482902527},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20508873462677002},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1751-0473-5-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:20193058","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20193058","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2848045","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2848045","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-5-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320326512","display_name":"Landes Tirols","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123528737.pdf","grobid_xml":"https://content.openalex.org/works/W2123528737.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1533179050","https://openalex.org/W2024853484","https://openalex.org/W2028245735","https://openalex.org/W2096863518","https://openalex.org/W2105381419","https://openalex.org/W2148139839","https://openalex.org/W2152155643","https://openalex.org/W2157795344","https://openalex.org/W2158940923","https://openalex.org/W2160697532","https://openalex.org/W4294107304","https://openalex.org/W4300944962"],"related_works":["https://openalex.org/W4242767529","https://openalex.org/W4250559090","https://openalex.org/W2500263600","https://openalex.org/W581416678","https://openalex.org/W4241515520","https://openalex.org/W2410943173","https://openalex.org/W4245677807","https://openalex.org/W3023333107","https://openalex.org/W2953241956","https://openalex.org/W4239177738"],"abstract_inverted_index":{"BACKGROUND:":[0],"Meta-analysis":[1],"is":[2,95,143,160,210],"a":[3,15,70,82,155,168,187],"major":[4],"theme":[5],"in":[6,46,68,86,175],"biomedical":[7],"research.":[8],"In":[9,59],"the":[10,34,53,79,103,137,141,182,195],"present":[11],"paper":[12],"we":[13,63,74],"introduce":[14],"package":[16,101],"for":[17,25,77,91,135],"R":[18],"and":[19,151,213],"Bioconductor":[20],"that":[21,39],"provides":[22],"useful":[23],"tools":[24,76],"performing":[26],"this":[27,60],"type":[28],"of":[29,36,55,84,93,106,165,189,194],"work.":[30],"One":[31],"idea":[32],"behind":[33],"development":[35],"MADAM":[37,166,198,209],"was":[38],"many":[40],"meta-analysis":[41,66,107,123,153],"methods,":[42,154],"which":[43],"are":[44,48,125],"available":[45,215],"R,":[47],"not":[49],"able":[50],"to":[51,117,170,179],"use":[52,164,193],"capacities":[54],"parallel":[56,71,206],"computing":[57,207],"yet.":[58],"first":[61],"version,":[62],"implemented":[64],"one":[65,173],"method":[67],"such":[69],"manner.":[72],"Additionally,":[73],"provide":[75],"combining":[78,136],"results":[80,94,142],"from":[81],"set":[83,188],"methods":[85,124,134],"an":[87,204],"ensemble":[88],"approach.":[89],"Functionality":[90],"visualization":[92],"also":[96],"provided.":[97],"RESULTS:":[98],"The":[99,163],"presented":[100],"enables":[102,167],"carrying":[104],"out":[105],"either":[108],"by":[109,114,145],"providing":[110],"functions":[111],"directly":[112],"or":[113],"wrapping":[115],"them":[116,178],"existing":[118,205],"implementations.":[119],"Overall,":[120],"five":[121],"different":[122],"now":[126],"usable":[127],"through":[128],"MADAM,":[129],"along":[130],"with":[131,181,203],"another":[132],"three":[133,146],"corresponding":[138],"results.":[139],"Visualizing":[140],"eased":[144],"included":[147],"functions.":[148],"For":[149],"developing":[150],"testing":[152],"mock":[156],"up":[157],"data":[158,184],"generator":[159],"integrated.":[161],"CONCLUSIONS:":[162],"user":[169],"focus":[171],"on":[172],"package,":[174,197],"turn":[176],"enabling":[177],"work":[180],"same":[183],"types":[185],"across":[186],"methods.":[190],"By":[191],"making":[192],"snow":[196],"can":[199],"be":[200],"made":[201],"compatible":[202],"infrastructure.":[208],"open":[211],"source":[212],"freely":[214],"within":[216],"CRAN":[217],"http://cran.r-project.org.":[218]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
