{"id":"https://openalex.org/W2104302081","doi":"https://doi.org/10.1186/1751-0473-5-1","title":"VersaCount: customizable manual tally software for cell counting","display_name":"VersaCount: customizable manual tally software for cell counting","publication_year":2010,"publication_date":"2010-01-13","ids":{"openalex":"https://openalex.org/W2104302081","doi":"https://doi.org/10.1186/1751-0473-5-1","mag":"2104302081","pmid":"https://pubmed.ncbi.nlm.nih.gov/20180957"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-5-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051497173","display_name":"Charles C. Kim","orcid":"https://orcid.org/0000-0001-6474-8227"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles C Kim","raw_affiliation_strings":["Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA. joe@derisilab.ucsf.edu","Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA. joe@derisilab.ucsf.edu","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039824565","display_name":"Joseph L. DeRisi","orcid":"https://orcid.org/0000-0002-4611-9205"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joseph L DeRisi","raw_affiliation_strings":["Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94158, USA","Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94158, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5039824565"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":null,"apc_paid":null,"fwci":1.4866,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.86084864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"5","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.5958999991416931,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.5958999991416931,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.14270000159740448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.04360000044107437,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8536087870597839},{"id":"https://openalex.org/keywords/keypad","display_name":"Keypad","score":0.7397008538246155},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6746678352355957},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6427174210548401},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5807927846908569},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4384959042072296},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3926226794719696},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.32368654012680054},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1827906370162964},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.18056157231330872}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8536087870597839},{"id":"https://openalex.org/C2780140372","wikidata":"https://www.wikidata.org/wiki/Q2009740","display_name":"Keypad","level":2,"score":0.7397008538246155},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6746678352355957},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6427174210548401},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5807927846908569},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4384959042072296},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3926226794719696},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.32368654012680054},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1827906370162964},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.18056157231330872},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1751-0473-5-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:20180957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20180957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:ark:/13030/qt1wk7t02t","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:e5d498b8e1f0490fbe5c0604af469ff4","is_oa":false,"landing_page_url":"https://doaj.org/article/e5d498b8e1f0490fbe5c0604af469ff4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 5, Iss 1, p 1 (2010)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1wk7t02t","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1wk7t02t","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source code for biology and medicine, vol 5, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2829563","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2829563","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-5-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-5-1","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-5-1","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.5600000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320306960","display_name":"A.P. Giannini Foundation","ror":"https://ror.org/01e3cnp62"},{"id":"https://openalex.org/F4320311186","display_name":"Giannini Foundation of Agricultural Economics","ror":"https://ror.org/00pjdza24"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104302081.pdf","grobid_xml":"https://content.openalex.org/works/W2104302081.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2031031385","https://openalex.org/W2040620478","https://openalex.org/W2044562217","https://openalex.org/W2069414278","https://openalex.org/W2167665596"],"related_works":["https://openalex.org/W1463741119","https://openalex.org/W226756271","https://openalex.org/W2379872548","https://openalex.org/W2385120180","https://openalex.org/W1979131826","https://openalex.org/W2370066713","https://openalex.org/W1984979050","https://openalex.org/W2352676044","https://openalex.org/W2978161533","https://openalex.org/W2379338802"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,72,119],"manual":[2,117,153],"counting":[3,75],"of":[4,36,44,74,78,89],"cells":[5],"by":[6],"microscopy":[7],"is":[8,30,84],"a":[9,34,56,90,127,137],"commonly":[10],"used":[11,22],"technique":[12],"across":[13],"biological":[14],"disciplines.":[15],"Traditionally,":[16],"hand":[17,154],"tally":[18,59,155],"counters":[19],"have":[20],"been":[21],"to":[23,97,99,152],"track":[24],"event":[25],"counts.":[26],"Although":[27],"this":[28],"method":[29],"adequate,":[31],"there":[32],"are":[33,106],"number":[35],"inefficiencies":[37],"which":[38],"arise":[39],"when":[40],"managing":[41],"large":[42,47,76,81],"numbers":[43,77],"samples":[45,79],"or":[46],"sample":[48,82],"sizes.":[49],"RESULTS:":[50],"We":[51],"describe":[52],"software":[53,144],"that":[54,93],"mimics":[55],"traditional":[57],"multi-register":[58],"counter.":[60],"Full":[61],"customizability":[62],"allows":[63,94],"operation":[64],"on":[65],"any":[66],"computer":[67],"with":[68,126],"minimal":[69],"hardware":[70],"requirements.":[71],"efficiency":[73],"and/or":[80],"sizes":[83],"improved":[85],"through":[86],"the":[87,134],"use":[88,125],"\"multi-count\"":[91],"register":[92],"single":[95],"keystrokes":[96],"correspond":[98],"multiple":[100],"events.":[101],"Automatically":[102],"updated":[103],"multi-parameter":[104],"values":[105],"implemented":[107],"as":[108],"user-specified":[109],"equations,":[110],"reducing":[111],"errors":[112],"and":[113,130,140,149],"time":[114],"required":[115],"for":[116,124,136],"calculations.":[118],"user":[120],"interface":[121],"was":[122],"optimized":[123],"touch":[128],"screen":[129],"numeric":[131],"keypad,":[132],"eliminating":[133],"need":[135],"full":[138],"keyboard":[139],"mouse.":[141],"CONCLUSIONS:":[142],"Our":[143],"provides":[145],"an":[146],"inexpensive,":[147],"flexible,":[148],"productivity-enhancing":[150],"alternative":[151],"counters.":[156]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
