{"id":"https://openalex.org/W2064363096","doi":"https://doi.org/10.1186/1751-0473-3-9","title":"FASH: A web application for nucleotides sequence search","display_name":"FASH: A web application for nucleotides sequence search","publication_year":2008,"publication_date":"2008-05-27","ids":{"openalex":"https://openalex.org/W2064363096","doi":"https://doi.org/10.1186/1751-0473-3-9","mag":"2064363096","pmid":"https://pubmed.ncbi.nlm.nih.gov/18505581"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-3-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062614879","display_name":"Isana Veksler\u2010Lublinsky","orcid":"https://orcid.org/0000-0002-4251-6158"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Isana Veksler-Lublinksy","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University, 84105 Beer-Sheva, Israel. klara@cs.bgu.ac.il","Department of Computer Science, Ben Gurion University, Beer Sheva, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University, 84105 Beer-Sheva, Israel. klara@cs.bgu.ac.il","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Department of Computer Science, Ben Gurion University, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033583960","display_name":"Danny Barash","orcid":"https://orcid.org/0000-0003-4389-5302"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Danny Barash","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","Department of Computer Science, Ben Gurion University, Beer Sheva, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Department of Computer Science, Ben Gurion University, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033623230","display_name":"Chai Avisar","orcid":null},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Chai Avisar","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","Department of Computer Science, Ben Gurion University, Beer Sheva, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Department of Computer Science, Ben Gurion University, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074049575","display_name":"Einav Troim","orcid":null},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Einav Troim","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","Department of Computer Science, Ben Gurion University, Beer Sheva, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Department of Computer Science, Ben Gurion University, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113695019","display_name":"Paul Chew","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Chew","raw_affiliation_strings":["Computer Science Department, 721 Rhodes Hall, Cornell University, Ithaca, NY, 14853, USA","Computer Science Department, 721 Rhodes Hall, Cornell University, Ithaca, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, 721 Rhodes Hall, Cornell University, Ithaca, NY, 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Computer Science Department, 721 Rhodes Hall, Cornell University, Ithaca, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033593347","display_name":"Klara Kedem","orcid":null},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Klara Kedem","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","Department of Computer Science, Ben Gurion University, Beer Sheva, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University, 84105, Beer-Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Department of Computer Science, Ben Gurion University, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033593347"],"corresponding_institution_ids":["https://openalex.org/I124227911"],"apc_list":null,"apc_paid":null,"fwci":0.2808,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60760938,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"3","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.46459999680519104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.46459999680519104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.20640000700950623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.13910000026226044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.683133602142334},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.563774824142456},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45406219363212585},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42855966091156006},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39831799268722534},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34178006649017334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16934829950332642},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1320943534374237}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.683133602142334},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.563774824142456},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45406219363212585},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42855966091156006},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39831799268722534},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34178006649017334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16934829950332642},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1320943534374237}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1751-0473-3-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:18505581","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18505581","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:54f6c8c68ee84c2bbd737462a96a7fae","is_oa":false,"landing_page_url":"https://doaj.org/article/54f6c8c68ee84c2bbd737462a96a7fae","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 3, Iss 1, p 9 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2426692","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2426692","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-3-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323051","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2064363096.pdf","grobid_xml":"https://content.openalex.org/works/W2064363096.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2015292449","https://openalex.org/W2017182956","https://openalex.org/W2048264150","https://openalex.org/W2079571677","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2112284452","https://openalex.org/W3085798047","https://openalex.org/W2374269412","https://openalex.org/W371123309","https://openalex.org/W2085500676","https://openalex.org/W2186272223","https://openalex.org/W2365096715","https://openalex.org/W2012817876","https://openalex.org/W4287666945"],"abstract_inverted_index":{"UNLABELLED:":[0],":":[1],"FASH":[2,39,51,63,87,99],"(Fourier":[3],"Alignment":[4],"Sequence":[5],"Heuristics)":[6],"is":[7,90],"a":[8,22,28,32],"web":[9,88],"application,":[10],"based":[11],"on":[12,75],"the":[13,36,43,49,76],"Fast":[14],"Fourier":[15],"Transform,":[16],"for":[17,58],"finding":[18],"remote":[19],"homologs":[20],"within":[21,42],"long":[23,33,60],"nucleic":[24],"acid":[25],"sequence.":[26],"Given":[27],"query":[29],"sequence":[30],"and":[31,93],"text-sequence":[34],"(e.g,":[35],"human":[37],"genome),":[38],"detects":[40],"subsequences":[41],"text":[44],"that":[45,70],"are":[46],"remotely-similar":[47],"to":[48,56,96],"query.":[50],"offers":[52],"an":[53],"alternative":[54],"approach":[55],"Blast/Fasta":[57],"querying":[59],"RNA/DNA":[61],"sequences.":[62],"differs":[64],"from":[65],"these":[66],"other":[67],"approaches":[68],"in":[69,81],"it":[71],"does":[72],"not":[73],"depend":[74],"existence":[77],"of":[78],"contiguous":[79],"seed-sequences":[80],"its":[82],"initial":[83],"detection":[84],"phase.":[85],"The":[86],"server":[89],"user":[91],"friendly":[92],"very":[94],"easy":[95],"operate.":[97],"AVAILABILITY:":[98],"can":[100],"be":[101],"accessed":[102],"athttps://fash.bgu.ac.il:8443/fash/default.jsp":[103],"(secured":[104],"website).":[105]},"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
