{"id":"https://openalex.org/W2079718438","doi":"https://doi.org/10.1186/1751-0473-3-4","title":"A Perl toolkit for LIMS development","display_name":"A Perl toolkit for LIMS development","publication_year":2008,"publication_date":"2008-03-19","ids":{"openalex":"https://openalex.org/W2079718438","doi":"https://doi.org/10.1186/1751-0473-3-4","mag":"2079718438","pmid":"https://pubmed.ncbi.nlm.nih.gov/18353174"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-3-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-3-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104306625","display_name":"James A. Morris","orcid":null},"institutions":[{"id":"https://openalex.org/I34931013","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08","country_code":"GB","type":"government","lineage":["https://openalex.org/I34931013"]},{"id":"https://openalex.org/I4210154689","display_name":"Institute for Reproductive Health","ror":"https://ror.org/00jt1e157","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210154689"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"James A Morris","raw_affiliation_strings":["Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK. c.jones@ucl.ac.uk","Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK. c.jones@ucl.ac.uk","institution_ids":["https://openalex.org/I4210154689","https://openalex.org/I45129253"]},{"raw_affiliation_string":"Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK","institution_ids":["https://openalex.org/I34931013","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047173565","display_name":"Simon A. Gayther","orcid":"https://orcid.org/0000-0001-7937-5443"},"institutions":[{"id":"https://openalex.org/I34931013","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08","country_code":"GB","type":"government","lineage":["https://openalex.org/I34931013"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon A Gayther","raw_affiliation_strings":["Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK","institution_ids":["https://openalex.org/I34931013","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007042275","display_name":"Ian Jacobs","orcid":"https://orcid.org/0000-0002-5005-2672"},"institutions":[{"id":"https://openalex.org/I34931013","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08","country_code":"GB","type":"government","lineage":["https://openalex.org/I34931013"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian J Jacobs","raw_affiliation_strings":["Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK","institution_ids":["https://openalex.org/I34931013","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101925122","display_name":"Christopher S. Jones","orcid":"https://orcid.org/0000-0002-8121-2341"},"institutions":[{"id":"https://openalex.org/I34931013","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08","country_code":"GB","type":"government","lineage":["https://openalex.org/I34931013"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Christopher Jones","raw_affiliation_strings":["Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK","UCL EGA Institute for Women's Health, University College London"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Translational Research Laboratories, UCL EGA Institute for Women's Health, University College London, UK","institution_ids":["https://openalex.org/I34931013","https://openalex.org/I45129253"]},{"raw_affiliation_string":"UCL EGA Institute for Women's Health, University College London","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101925122"],"corresponding_institution_ids":["https://openalex.org/I34931013","https://openalex.org/I45129253"],"apc_list":null,"apc_paid":null,"fwci":2.6283,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.91857488,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14215","display_name":"Chemical and Environmental Engineering Research","score":0.39980000257492065,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14215","display_name":"Chemical and Environmental Engineering Research","score":0.39980000257492065,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13523","display_name":"Mathematics, Computing, and Information Processing","score":0.08420000225305557,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13286","display_name":"Modeling and Simulation Systems","score":0.06350000202655792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.924609899520874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8230356574058533},{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.6905280947685242},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4357392489910126},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.4230043292045593},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.39838382601737976},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38471123576164246},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35070931911468506}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.924609899520874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8230356574058533},{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.6905280947685242},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4357392489910126},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.4230043292045593},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.39838382601737976},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38471123576164246},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35070931911468506},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1751-0473-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-3-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:18353174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18353174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/a33dff49-ae98-4948-a4d2-c632fc54680d","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/a33dff49-ae98-4948-a4d2-c632fc54680d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Morris, J A, Gayther, S A, Jacobs, I J & Jones, C 2008, 'A Perl toolkit for LIMS development', Source code for biology and medicine, vol. 3, 4. https://doi.org/10.1186/1751-0473-3-4","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:5299","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/5299/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Source Code Biol Med , 3    4-.   (2008)      ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2322998","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2322998","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-3-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2079718438.pdf","grobid_xml":"https://content.openalex.org/works/W2079718438.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W1986071441"],"related_works":["https://openalex.org/W2031651259","https://openalex.org/W3005439998","https://openalex.org/W2914594906","https://openalex.org/W2370993421","https://openalex.org/W2889726333","https://openalex.org/W5653","https://openalex.org/W1428729482","https://openalex.org/W2225555018","https://openalex.org/W2565381658","https://openalex.org/W2001558610"],"abstract_inverted_index":{"BACKGROUND:":[0],"High":[1],"throughput":[2],"laboratory":[3],"techniques":[4],"generate":[5],"huge":[6],"quantities":[7],"of":[8,48,55,69,72,89,123,145,177,190,221,233,261],"scientific":[9],"data.":[10],"Laboratory":[11],"Information":[12],"Management":[13],"Systems":[14],"(LIMS)":[15],"are":[16,32,148,152],"a":[17,53,63,67,73,81,114,165,191,225],"necessary":[18],"requirement,":[19],"dealing":[20],"with":[21,201],"sample":[22],"tracking,":[23],"data":[24,27,280],"storage":[25],"and":[26,40,97,110,112,117,135,205,207,209,219,244,267],"reporting.":[28],"Commercial":[29],"LIMS":[30,50,86,127,146,155,179,227,264,274],"solutions":[31,51],"available,":[33],"but":[34,92,150],"these":[35],"can":[36,131,228],"be":[37,229],"both":[38],"costly":[39],"overly":[41],"complex":[42],"for":[43,85,105,158,195,217,241],"the":[44,58,70,142,174,234,253,259],"task.":[45],"The":[46,76,121,181,212],"development":[47,83,109,122,144,156,176,260],"bespoke":[49,178,273],"offers":[52],"number":[54],"advantages,":[56],"including":[57],"flexibility":[59],"to":[60,94,252,271,276],"fulfil":[61],"all":[62],"laboratory's":[64],"requirements":[65],"at":[66],"fraction":[68],"price":[71],"commercial":[74],"system.":[75],"programming":[77,138],"language":[78],"Perl":[79,166,184,254],"is":[80,101],"perfect":[82],"solution":[84],"applications":[87,147,265,275],"because":[88],"Perl's":[90],"powerful":[91],"simple":[93],"use":[95],"database":[96,242],"web":[98,198,245],"interaction,":[99],"it":[100],"also":[102],"well":[103],"known":[104],"enabling":[106],"rapid":[107,143,175],"application":[108],"deployment,":[111],"boasts":[113],"very":[115],"active":[116],"helpful":[118],"developer":[119],"community.":[120],"an":[124],"in":[125,262],"house":[126,263],"from":[128],"scratch":[129],"however":[130],"take":[132],"considerable":[133],"time":[134],"resources,":[136],"so":[137],"tools":[139,157],"that":[140,172,186],"enable":[141],"essential":[149],"there":[151],"currently":[153],"no":[154],"Perl.":[159],"RESULTS:":[160],"We":[161],"have":[162],"developed":[163],"ArrayPipeline,":[164],"toolkit":[167,182],"providing":[168,193,237],"object":[169,214],"oriented":[170],"methods":[171,194,216,240],"facilitate":[173],"applications.":[180],"includes":[183],"objects":[185],"encapsulate":[187],"key":[188],"components":[189],"LIMS,":[192],"creating":[196],"interactive":[197],"pages,":[199],"interacting":[200],"databases,":[202],"error":[203],"tracking":[204],"reporting,":[206],"user":[208],"session":[210],"management.":[211,247],"MT_Plate":[213],"provides":[215],"manipulation":[218],"management":[220,281],"microtitre":[222],"plates,":[223],"while":[224],"given":[226],"encapsulated":[230],"by":[231],"extension":[232],"core":[235],"modules,":[236],"system":[238],"specific":[239,279],"interaction":[243],"page":[246],"CONCLUSION:":[248],"This":[249],"important":[250],"addition":[251],"developer's":[255],"library":[256],"will":[257],"make":[258],"quicker":[266],"easier":[268],"encouraging":[269],"laboratories":[270],"create":[272],"meet":[277],"their":[278],"requirements.":[282]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
