{"id":"https://openalex.org/W2073510372","doi":"https://doi.org/10.1186/1751-0473-3-3","title":"Epigrass: a tool to study disease spread in complex networks","display_name":"Epigrass: a tool to study disease spread in complex networks","publication_year":2008,"publication_date":"2008-02-26","ids":{"openalex":"https://openalex.org/W2073510372","doi":"https://doi.org/10.1186/1751-0473-3-3","mag":"2073510372","pmid":"https://pubmed.ncbi.nlm.nih.gov/18302744"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006736248","display_name":"Fl\u00e1vio Code\u00e7o Coelho","orcid":"https://orcid.org/0000-0003-3868-4391"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fl\u00e1vio C Coelho","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049265778","display_name":"Oswaldo Gon\u00e7alves Cruz","orcid":"https://orcid.org/0000-0002-3289-3195"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Oswaldo G Cruz","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001956028","display_name":"Cl\u00e1udia Torres Code\u00e7o","orcid":"https://orcid.org/0000-0003-1174-178X"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Cl\u00e1udia T Code\u00e7o","raw_affiliation_strings":["Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Programa de Computa\u00e7\u00e3o Cient\u00edfica, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, Brasil,","institution_ids":["https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006736248"],"corresponding_institution_ids":["https://openalex.org/I52325"],"apc_list":null,"apc_paid":null,"fwci":3.2593,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.91428571,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.8321999907493591,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.8321999907493591,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.011599999852478504,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6333889961242676},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5558223128318787}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6333889961242676},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5558223128318787}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1751-0473-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:18302744","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18302744","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2275240","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2275240","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-3-3","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-3-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8199999928474426,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2073510372.pdf","grobid_xml":"https://content.openalex.org/works/W2073510372.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1965499304","https://openalex.org/W1977470776","https://openalex.org/W2002661727","https://openalex.org/W2050802365","https://openalex.org/W2071827932","https://openalex.org/W2076545815","https://openalex.org/W2077799900","https://openalex.org/W2085140951","https://openalex.org/W2101110089","https://openalex.org/W2108273817","https://openalex.org/W2126175245","https://openalex.org/W2141011194","https://openalex.org/W2141203530","https://openalex.org/W2147166346","https://openalex.org/W2153296467","https://openalex.org/W2162707016","https://openalex.org/W2170131286"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,176],"construction":[2],"of":[3,24,49,112,123,143,147,151,172,178,191,195],"complex":[4,173],"spatial":[5],"simulation":[6,98,169],"models":[7,108],"such":[8],"as":[9],"those":[10],"used":[11],"in":[12,27,135,181],"network":[13,131,174],"epidemiology,":[14],"is":[15,150,162],"a":[16,97,124,129],"daunting":[17],"task":[18],"due":[19],"to":[20,40,45,55,63,102,164],"the":[21,46,50,57,121,140,144,148,167,187],"large":[22,36],"amount":[23],"data":[25],"involved":[26],"their":[28],"parameterization.":[29],"Such":[30],"data,":[31],"which":[32],"frequently":[33],"resides":[34],"on":[35],"geo-referenced":[37],"databases,":[38],"has":[39,62],"be":[41,64,76],"processed":[42],"and":[43,66,105,157,170,189],"assigned":[44],"various":[47],"components":[48],"model.":[51],"All":[52],"this":[53,93],"just":[54],"construct":[56],"model,":[58],"then":[59],"it":[60],"still":[61],"simulated":[65],"analyzed":[67],"under":[68],"different":[69],"epidemiological":[70,118],"scenarios.":[71],"This":[72],"workflow":[73],"can":[74,83],"only":[75],"achieved":[77],"efficiently":[78],"by":[79,193],"computational":[80],"tools":[81],"that":[82,139],"automate":[84],"most,":[85],"if":[86],"not":[87],"all,":[88],"these":[89],"time-consuming":[90],"tasks.":[91],"In":[92],"paper,":[94],"we":[95],"present":[96],"software,":[99],"Epigrass,":[100],"aimed":[101],"help":[103],"designing":[104],"simulating":[106],"network-epidemic":[107],"with":[109],"any":[110],"kind":[111],"node":[113],"behavior.":[114],"RESULTS:":[115],"A":[116],"Network":[117],"model":[119,179],"representing":[120],"spread":[122],"directly":[125],"transmitted":[126],"disease":[127],"through":[128],"bus-transportation":[130],"connecting":[132],"mid-size":[133],"cities":[134],"Brazil.":[136],"Results":[137],"show":[138],"topological":[141],"context":[142],"starting":[145],"point":[146],"epidemic":[149],"great":[152],"importance":[153],"from":[154],"both":[155],"control":[156],"preventive":[158],"perspectives.":[159],"CONCLUSION:":[160],"Epigrass":[161],"shown":[163],"facilitate":[165,186],"greatly":[166],"construction,":[168],"analysis":[171,190],"models.":[175],"output":[177],"results":[180,192],"standard":[182],"GIS":[183,197],"file":[184],"formats":[185],"post-processing":[188],"means":[194],"sophisticated":[196],"software.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}