{"id":"https://openalex.org/W2128010635","doi":"https://doi.org/10.1186/1751-0473-2-9","title":"Bioinformatics process management: information flow via a computational journal","display_name":"Bioinformatics process management: information flow via a computational journal","publication_year":2007,"publication_date":"2007-12-01","ids":{"openalex":"https://openalex.org/W2128010635","doi":"https://doi.org/10.1186/1751-0473-2-9","mag":"2128010635","pmid":"https://pubmed.ncbi.nlm.nih.gov/18053179"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-2-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-2-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091005925","display_name":"Lance Feagan","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lance Feagan","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087014095","display_name":"Justin P. Rohrer","orcid":"https://orcid.org/0000-0002-3335-5612"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Rohrer","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032797714","display_name":"Alexander S. Garrett","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Garrett","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059609987","display_name":"Heather Amthauer","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heather Amthauer","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108230201","display_name":"Ed Komp","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ed Komp","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086565247","display_name":"David K. Johnson","orcid":"https://orcid.org/0000-0003-4262-8173"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Johnson","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047864463","display_name":"Adam S. Hock","orcid":"https://orcid.org/0000-0003-1440-1473"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Hock","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109082953","display_name":"Terry Clark","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry Clark","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061260927","display_name":"Gerald H. Lushington","orcid":"https://orcid.org/0000-0001-5821-4253"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gerald Lushington","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066877912","display_name":"Gary J. Minden","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary Minden","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110250639","display_name":"Victor S. Frost","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victor Frost","raw_affiliation_strings":["Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, Kansas, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Information and Telecommunication Technology Center, University of Kansas, Lawrence, USA","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5091005925"],"corresponding_institution_ids":["https://openalex.org/I146416000"],"apc_list":null,"apc_paid":null,"fwci":2.1396,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.90803426,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8709535002708435},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6248143315315247},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.6001334190368652},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5809922814369202},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5291063189506531},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.528719961643219},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.510031521320343},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46269330382347107},{"id":"https://openalex.org/keywords/computational-problem","display_name":"Computational problem","score":0.4215371608734131},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4037259519100189},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3315831124782562},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3244101405143738},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2774509787559509},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22873103618621826},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14597877860069275}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8709535002708435},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6248143315315247},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.6001334190368652},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5809922814369202},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5291063189506531},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.528719961643219},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.510031521320343},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46269330382347107},{"id":"https://openalex.org/C19754495","wikidata":"https://www.wikidata.org/wiki/Q3435924","display_name":"Computational problem","level":2,"score":0.4215371608734131},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4037259519100189},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3315831124782562},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3244101405143738},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2774509787559509},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22873103618621826},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14597877860069275},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1751-0473-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-2-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:18053179","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18053179","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:5b7d1496e5594b9aaa70a6d7eb034343","is_oa":false,"landing_page_url":"https://doaj.org/article/5b7d1496e5594b9aaa70a6d7eb034343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 2, Iss 1, p 9 (2007)","raw_type":"article"},{"id":"pmh:oai:kuscholarworks.ku.edu:1808/12806","is_oa":true,"landing_page_url":"http://hdl.handle.net/1808/12806","pdf_url":null,"source":{"id":"https://openalex.org/S4306400421","display_name":"KU ScholarWorks (The University of Kansas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146416000","host_organization_name":"University of Kansas","host_organization_lineage":["https://openalex.org/I146416000"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:kuscholarworks.ku.edu:1808/18687","is_oa":true,"landing_page_url":"http://hdl.handle.net/1808/18687","pdf_url":null,"source":{"id":"https://openalex.org/S4306400421","display_name":"KU ScholarWorks (The University of Kansas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146416000","host_organization_name":"University of Kansas","host_organization_lineage":["https://openalex.org/I146416000"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2228283","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2228283","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-9","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-2-9","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2186355850","display_name":null,"funder_award_id":"BS123456","funder_id":"https://openalex.org/F4320306111","funder_display_name":"U.S. Department of Commerce"}],"funders":[{"id":"https://openalex.org/F4320306111","display_name":"U.S. Department of Commerce","ror":"https://ror.org/04chq2495"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128010635.pdf","grobid_xml":"https://content.openalex.org/works/W2128010635.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W116282794","https://openalex.org/W1482582909","https://openalex.org/W1535260640","https://openalex.org/W1590455801","https://openalex.org/W1968766436","https://openalex.org/W1985048417","https://openalex.org/W1988431525","https://openalex.org/W1994326726","https://openalex.org/W1996423252","https://openalex.org/W2029667189","https://openalex.org/W2055043387","https://openalex.org/W2064632458","https://openalex.org/W2107523227","https://openalex.org/W2128010635","https://openalex.org/W2128374023","https://openalex.org/W2150981663","https://openalex.org/W2154063224","https://openalex.org/W2165482734","https://openalex.org/W4240861547","https://openalex.org/W4245145908","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1569631234","https://openalex.org/W3105486044","https://openalex.org/W2365377379","https://openalex.org/W15898768","https://openalex.org/W2112929436","https://openalex.org/W2354102142","https://openalex.org/W2324968893","https://openalex.org/W4383863468","https://openalex.org/W2378302565","https://openalex.org/W17854358"],"abstract_inverted_index":{"This":[0,160],"paper":[1],"presents":[2],"the":[3,104,134,140,143,163,179,185],"Bioinformatics":[4],"Computational":[5],"Journal":[6],"(BCJ),":[7],"a":[8,37,93,152],"framework":[9,145],"for":[10,98,116,157],"conducting":[11],"and":[12,18,31,60,128,136,170],"managing":[13],"computational":[14,19,43,126,137,144],"experiments":[15,22,44],"in":[16],"bioinformatics":[17,135],"biology.":[20],"These":[21],"often":[23,78],"involve":[24],"series":[25],"of":[26,119,142,155,181,184],"computations,":[27],"data":[28,51],"searches,":[29],"filters,":[30],"annotations":[32],"which":[33,101],"can":[34],"benefit":[35],"from":[36,47],"structured":[38],"environment.":[39],"Systems":[40],"to":[41,53,56,80,89,150],"manage":[42],"exist,":[45],"ranging":[46],"libraries":[48],"with":[49,174],"standard":[50],"models":[52],"elaborate":[54],"schemes":[55],"chain":[57],"together":[58],"input":[59],"output":[61],"between":[62],"applications.":[63,120],"Yet,":[64],"although":[65],"such":[66],"frameworks":[67],"are":[68,77],"available,":[69],"their":[70],"use":[71,180],"is":[72],"not":[73],"widespread-ad":[74],"hoc":[75],"scripts":[76],"required":[79],"bind":[81],"applications":[82],"together.":[83],"The":[84],"BCJ":[85,186],"explores":[86],"another":[87],"solution":[88],"this":[90,158],"problem":[91],"through":[92],"computer":[94],"based":[95],"environment":[96],"suitable":[97],"on-site":[99],"use,":[100],"builds":[102],"on":[103,133,187],"traditional":[105],"laboratory":[106],"notebook":[107],"paradigm.":[108],"It":[109],"provides":[110],"an":[111],"intuitive,":[112],"extensible":[113],"paradigm":[114],"designed":[115],"expressive":[117],"composition":[118],"Extensive":[121],"features":[122,156,164],"facilitate":[123],"sharing":[124],"data,":[125],"methods,":[127],"entire":[129],"experiments.":[130],"By":[131],"focusing":[132],"biology":[138],"domain,":[139],"scope":[141],"was":[146],"narrowed,":[147],"permitting":[148],"us":[149],"implement":[151],"capable":[153],"set":[154],"domain.":[159],"report":[161],"discusses":[162],"determined":[165],"critical":[166],"by":[167],"our":[168,182],"system":[169],"other":[171],"projects,":[172],"along":[173],"design":[175],"issues.":[176],"We":[177],"illustrate":[178],"implementation":[183],"two":[188],"domain-specific":[189],"examples.":[190]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
