{"id":"https://openalex.org/W2131024678","doi":"https://doi.org/10.1186/1751-0473-2-4","title":"PatentMatrix: an automated tool to survey patents related to large sets of genes or proteins","display_name":"PatentMatrix: an automated tool to survey patents related to large sets of genes or proteins","publication_year":2007,"publication_date":"2007-09-06","ids":{"openalex":"https://openalex.org/W2131024678","doi":"https://doi.org/10.1186/1751-0473-2-4","mag":"2131024678","pmid":"https://pubmed.ncbi.nlm.nih.gov/17822555"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-2-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000269292","display_name":"Armin Lahm","orcid":"https://orcid.org/0000-0002-2859-4379"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Armin Lahm","raw_affiliation_strings":["Biotechnology Department, IRBM P, Angeletti, Merck MRL-Rome, Via Pontina Km, 30600 Pomezia, Italy. emanuele_derinaldis@merck.com","Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Department, IRBM P, Angeletti, Merck MRL-Rome, Via Pontina Km, 30600 Pomezia, Italy. emanuele_derinaldis@merck.com","institution_ids":[]},{"raw_affiliation_string":"Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, Italy","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066294430","display_name":"Emanuele de Rinaldis","orcid":"https://orcid.org/0000-0002-0221-1114"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]},{"id":"https://openalex.org/I4210149054","display_name":"IRBM Science Park","ror":"https://ror.org/03ndq5j60","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210149054"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Emanuele de Rinaldis","raw_affiliation_strings":["Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, 30600, Pomezia, Italy","Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, 30600, Pomezia, Italy","institution_ids":["https://openalex.org/I4210149054"]},{"raw_affiliation_string":"Biotechnology Department, IRBM P. Angeletti, Merck MRL-Rome, Via Pontina Km, Italy","institution_ids":["https://openalex.org/I1285764155"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5000269292"],"corresponding_institution_ids":["https://openalex.org/I1285764155"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.18924575,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10856","display_name":"Intellectual Property and Patents","score":0.7027000188827515,"subfield":{"id":"https://openalex.org/subfields/1405","display_name":"Management of Technology and Innovation"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10856","display_name":"Intellectual Property and Patents","score":0.7027000188827515,"subfield":{"id":"https://openalex.org/subfields/1405","display_name":"Management of Technology and Innovation"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.05460000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14293","display_name":"Biotechnology and Related Fields","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5960965752601624},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5559996366500854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43168339133262634},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4002879858016968},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3295744061470032},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15458253026008606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5960965752601624},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5559996366500854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43168339133262634},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4002879858016968},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3295744061470032},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15458253026008606}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1751-0473-2-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:17822555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17822555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:kclpure.kcl.ac.uk:openaire/002424a8-a2c2-4932-9a86-e9d2d1d4beb8","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/002424a8-a2c2-4932-9a86-e9d2d1d4beb8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lahm, A & de Rinaldis, E 2007, 'PatentMatrix : an automated tool to survey patents related to large sets of genes or proteins', Source code for biology and medicine, vol. 2, pp. 4. https://doi.org/10.1186/1751-0473-2-4","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:4350a27337604de3a0741b87e2d1333e","is_oa":false,"landing_page_url":"https://doaj.org/article/4350a27337604de3a0741b87e2d1333e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 2, Iss 1, p 4 (2007)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2025596","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2025596","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-2-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-4","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-4","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131024678.pdf","grobid_xml":"https://content.openalex.org/works/W2131024678.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1521708890","https://openalex.org/W1566012138","https://openalex.org/W1661470104","https://openalex.org/W1730348256","https://openalex.org/W1969700934","https://openalex.org/W2003481233"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,142],"number":[2],"of":[3,13,28,31,70,88,113,129,135,156,163,178,182,208,218,226,228,239,250,266],"patents":[4,240],"associated":[5,33,119,241],"with":[6,117,201,242],"genes":[7,35,114,220,243,272],"and":[8,10,55,85,152,204,269],"proteins":[9,116,245,274],"the":[11,25,29,67,82,89,97,118,132,149,161,167,170,179,186,199,209,215,224,263],"amount":[12],"information":[14,172],"contained":[15],"in":[16,81,223,246],"each":[17,153,183],"patent":[18,49,71,93,122,154,184],"often":[19],"present":[20,60],"a":[21,62,111,127,175,202,236,247],"real":[22],"obstacle":[23],"to":[24,34,261,270,276],"rapid":[26,237],"evaluation":[27],"novelty":[30,265],"findings":[32,268],"from":[36,185],"an":[37,205],"intellectual":[38],"property":[39],"(IP)":[40],"perspective.":[41],"This":[42],"assessment,":[43],"normally":[44],"carried":[45],"out":[46],"by":[47,104,254],"expert":[48],"professionals,":[50],"can":[51,257],"therefore":[52],"become":[53],"cumbersome":[54],"time":[56],"consuming.":[57],"Here":[58],"we":[59],"PatentMatrix,":[61],"novel":[63],"software":[64,102,168],"tool":[65],"for":[66,160,174,230],"automated":[68],"analysis":[69],"sequence":[72,94,98,123],"text":[73],"entries.":[74],"METHODS":[75],"AND":[76],"RESULTS:":[77],"PatentMatrix":[78,234],"is":[79,146,158,212,221],"written":[80],"Awk":[83],"language":[84],"requires":[86],"installation":[87],"Derwent":[90],"GENESEQtrade":[91,120,143,187],"mark":[92,121,144,188],"database":[95,145],"under":[96],"retrieval":[99],"system":[100,151],"SRS.The":[101],"works":[103],"taking":[105],"as":[106,252],"input":[107],"two":[108,192],"files:":[109],"i)":[110],"list":[112,128],"or":[115,244,273],"accession":[124],"numbers":[125],"ii)":[126],"keywords":[130],"describing":[131],"research":[133],"context":[134,225],"interest":[136,157,251],"(e.g.":[137],"'lung',":[138],"'cancer',":[139],"'therapeutics',":[140],"'diagnostics').":[141],"interrogated":[147],"through":[148],"SRS":[150],"entry":[155],"screened":[159],"occurrence":[162],"user-defined":[164],"keywords.":[165,255],"Moreover,":[166],"extracts":[169],"basic":[171],"useful":[173],"preliminary":[176],"assessment":[177],"IP":[180,216,278],"coverage":[181],"database.":[189],"As":[190],"output,":[191],"tab-delimited":[193],"files":[194],"are":[195],"generated":[196],"which":[197],"provide":[198],"user":[200],"detailed":[203],"aggregated":[206],"view":[207],"results.An":[210],"example":[211],"given":[213],"where":[214],"position":[217],"five":[219],"evaluated":[222],"'development":[227],"antibodies":[229],"cancer":[231],"treatment'":[232],"CONCLUSION:":[233],"allows":[235],"survey":[238],"particular":[248],"area":[249],"defined":[253],"It":[256],"be":[258],"efficiently":[259],"used":[260],"evaluate":[262],"IP-related":[264],"scientific":[267],"rank":[271],"according":[275],"their":[277],"position.":[279]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
