{"id":"https://openalex.org/W2124450302","doi":"https://doi.org/10.1186/1751-0473-2-3","title":"The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures","display_name":"The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures","publication_year":2007,"publication_date":"2007-08-07","ids":{"openalex":"https://openalex.org/W2124450302","doi":"https://doi.org/10.1186/1751-0473-2-3","mag":"2124450302","pmid":"https://pubmed.ncbi.nlm.nih.gov/17683623"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-2-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-3","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005816688","display_name":"Alessio Ceroni","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alessio Ceroni","raw_affiliation_strings":["Division of Molecular Biosciences, Imperial College London, SW7 2AZ, UK. a.ceroni@imperial.ac.uk","Division of Molecular Biosciences, Imperial College London, SW7, UK"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7 2AZ, UK. a.ceroni@imperial.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080001443","display_name":"Anne Dell","orcid":"https://orcid.org/0000-0003-1380-2347"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anne Dell","raw_affiliation_strings":["Division of Molecular Biosciences, Imperial College London, SW7, 2AZ, UK","Division of Molecular Biosciences, Imperial College London, SW7, UK"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7, 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007738960","display_name":"Stuart M. Haslam","orcid":"https://orcid.org/0000-0002-5563-679X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart M Haslam","raw_affiliation_strings":["Division of Molecular Biosciences, Imperial College London, SW7, 2AZ, UK","Division of Molecular Biosciences, Imperial College London, SW7, UK"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7, 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Division of Molecular Biosciences, Imperial College London, SW7, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005816688"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":4.4211,"has_fulltext":true,"cited_by_count":149,"citation_normalized_percentile":{"value":0.95424328,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10835","display_name":"Carbohydrate Chemistry and Synthesis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11131","display_name":"Proteoglycans and glycosaminoglycans research","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7629877924919128},{"id":"https://openalex.org/keywords/glycomics","display_name":"Glycomics","score":0.7179337739944458},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.6619352102279663},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.6023101210594177},{"id":"https://openalex.org/keywords/glycome","display_name":"Glycome","score":0.5534112453460693},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5304747223854065},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.5197660326957703},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5038909316062927},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37668493390083313},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2318609356880188},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12593883275985718},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09854069352149963}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7629877924919128},{"id":"https://openalex.org/C106686826","wikidata":"https://www.wikidata.org/wiki/Q741206","display_name":"Glycomics","level":4,"score":0.7179337739944458},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.6619352102279663},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.6023101210594177},{"id":"https://openalex.org/C158650290","wikidata":"https://www.wikidata.org/wiki/Q3063952","display_name":"Glycome","level":4,"score":0.5534112453460693},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5304747223854065},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.5197660326957703},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5038909316062927},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37668493390083313},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2318609356880188},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12593883275985718},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09854069352149963},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1751-0473-2-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-3","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:17683623","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17683623","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1994674","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1994674","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-2-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-2-3","pdf_url":"https://scfbm.biomedcentral.com/counter/pdf/10.1186/1751-0473-2-3","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124450302.pdf","grobid_xml":"https://content.openalex.org/works/W2124450302.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1472043191","https://openalex.org/W1559966695","https://openalex.org/W1820870565","https://openalex.org/W1883499202","https://openalex.org/W1902335026","https://openalex.org/W1972393591","https://openalex.org/W1983217234","https://openalex.org/W2017469968","https://openalex.org/W2079804839","https://openalex.org/W2081352653","https://openalex.org/W2090000207","https://openalex.org/W2090070826","https://openalex.org/W2150547580","https://openalex.org/W2163577472","https://openalex.org/W2911541246","https://openalex.org/W2982835505","https://openalex.org/W3021749114"],"related_works":["https://openalex.org/W2364920339","https://openalex.org/W2084766638","https://openalex.org/W2028136243","https://openalex.org/W3160816762","https://openalex.org/W3134514626","https://openalex.org/W4206927905","https://openalex.org/W2076975212","https://openalex.org/W2909198132","https://openalex.org/W1133142102","https://openalex.org/W3197663069"],"abstract_inverted_index":{"The":[0,19,43,61,110],"rendering":[1,21],"algorithm":[2],"described":[3],"here":[4],"is":[5,64,97],"able":[6],"to":[7,26,70,88,119],"produce":[8],"high-quality":[9],"representations":[10],"of":[11,59,106,122,126],"glycan":[12,107,127],"structures":[13,128],"in":[14,48,129],"a":[15,31,52,67,76,100,113],"chosen":[16],"symbolic":[17],"notation.":[18],"automated":[20],"process":[22],"enables":[23],"the":[24,56,80,98,120],"\"GlycanBuilder\"":[25,44,81,111],"be":[27,46,83],"used":[28],"both":[29],"as":[30,38,51,66],"user-independent":[32],"component":[33,63],"for":[34,55,103],"displaying":[35],"glycans":[36],"and":[37,91,116,124],"an":[39,72,95],"easy-to-use":[40],"drawing":[41],"tool.":[42],"can":[45,82],"integrated":[47,84],"web":[49,68],"pages":[50],"Java":[53],"applet":[54],"visual":[57],"editing":[58],"glycans.":[60],"same":[62],"available":[65],"service":[69],"render":[71],"encoded":[73],"structure":[74],"into":[75,85],"graphical":[77],"format.":[78],"Finally,":[79],"other":[86],"applications":[87],"create":[89],"intuitive":[90],"appealing":[92],"user":[93],"interfaces:":[94],"example":[96],"\"GlycoWorkbench\",":[99],"software":[101],"tool":[102,132],"assisted":[104],"annotation":[105],"mass":[108],"spectra.":[109],"represent":[112],"flexible,":[114],"reliable":[115],"efficient":[117],"solution":[118],"problem":[121],"input":[123],"output":[125],"any":[130],"glycomic":[131],"or":[133],"database.":[134]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
