{"id":"https://openalex.org/W2157271895","doi":"https://doi.org/10.1186/1751-0473-1-8","title":"BISON: bio-interface for the semi-global analysis of network patterns","display_name":"BISON: bio-interface for the semi-global analysis of network patterns","publication_year":2006,"publication_date":"2006-11-29","ids":{"openalex":"https://openalex.org/W2157271895","doi":"https://doi.org/10.1186/1751-0473-1-8","mag":"2157271895","pmid":"https://pubmed.ncbi.nlm.nih.gov/17147788"},"language":"en","primary_location":{"id":"doi:10.1186/1751-0473-1-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-1-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-1-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-1-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070711343","display_name":"Christopher Besemann","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher Besemann","raw_affiliation_strings":["Department of Computer Sciences, North Dakota State University, Fargo ND 58105, USA. Christopher.Besemann@ndsu.edu","Department of Computer Sciences, North Dakota State University, Fargo, ND, 58105, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, North Dakota State University, Fargo ND 58105, USA. Christopher.Besemann@ndsu.edu","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Computer Sciences, North Dakota State University, Fargo, ND, 58105, USA","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041754762","display_name":"Anne Denton","orcid":"https://orcid.org/0000-0002-2135-9501"},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne Denton","raw_affiliation_strings":["Department of Computer Sciences, North Dakota State University, Fargo, ND, 58105, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, North Dakota State University, Fargo, ND, 58105, USA","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057265165","display_name":"Nathan J Carr","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan J Carr","raw_affiliation_strings":["Department of Veterinary and Microbiological Sciences, North Dakota State University, Fargo, ND, 58105, USA"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary and Microbiological Sciences, North Dakota State University, Fargo, ND, 58105, USA","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108256529","display_name":"Birgit M. Pr\u00fc\u03b2","orcid":null},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Birgit M Pr\u00fc\u03b2","raw_affiliation_strings":["Department of Veterinary and Microbiological Sciences, North Dakota State University, Fargo, ND, 58105, USA"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary and Microbiological Sciences, North Dakota State University, Fargo, ND, 58105, USA","institution_ids":["https://openalex.org/I57328836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5070711343"],"corresponding_institution_ids":["https://openalex.org/I57328836"],"apc_list":null,"apc_paid":null,"fwci":0.4087,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6265668,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"1","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6806561946868896},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6503006815910339},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6146440505981445},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.48133954405784607},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.47986167669296265},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4617561995983124},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4348069727420807},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23983046412467957},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.15228015184402466}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6806561946868896},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6503006815910339},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6146440505981445},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.48133954405784607},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.47986167669296265},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4617561995983124},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4348069727420807},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23983046412467957},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.15228015184402466},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1751-0473-1-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-1-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-1-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:17147788","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17147788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source code for biology and medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:51edd56299b84c279db0e5f60e120fb0","is_oa":true,"landing_page_url":"https://doaj.org/article/51edd56299b84c279db0e5f60e120fb0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code for Biology and Medicine, Vol 1, Iss 1, p 8 (2006)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1698476","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1698476","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Source Code Biol Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1751-0473-1-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1751-0473-1-8","pdf_url":"https://scfbm.biomedcentral.com/track/pdf/10.1186/1751-0473-1-8","source":{"id":"https://openalex.org/S45786803","display_name":"Source Code for Biology and Medicine","issn_l":"1751-0473","issn":["1751-0473"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Source Code for Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.699999988079071,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G1311706445","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320338283","funder_display_name":"Office of Experimental Program to Stimulate Competitive Research"},{"id":"https://openalex.org/G5493910751","display_name":"Data Mining in the Presence of Quantitatively and Qualitatively Diverse Information","funder_award_id":"0415190","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8872392817","display_name":"Advancing Science Excellence in North Dakota (ASEND)","funder_award_id":"0132289","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320309013","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22"},{"id":"https://openalex.org/F4320312578","display_name":"North Dakota Agricultural Experiment Station","ror":null},{"id":"https://openalex.org/F4320332778","display_name":"Animal and Plant Health Inspection Service","ror":"https://ror.org/0599wfz09"},{"id":"https://openalex.org/F4320338283","display_name":"Office of Experimental Program to Stimulate Competitive Research","ror":"https://ror.org/04k9mqs78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157271895.pdf","grobid_xml":"https://content.openalex.org/works/W2157271895.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W648027589","https://openalex.org/W1506285740","https://openalex.org/W1901908377","https://openalex.org/W1961694262","https://openalex.org/W1976411835","https://openalex.org/W1983418060","https://openalex.org/W1990595232","https://openalex.org/W2001199771","https://openalex.org/W2002637675","https://openalex.org/W2030426089","https://openalex.org/W2056399792","https://openalex.org/W2061417134","https://openalex.org/W2065304353","https://openalex.org/W2094879449","https://openalex.org/W2097798630","https://openalex.org/W2099645570","https://openalex.org/W2101717982","https://openalex.org/W2103016908","https://openalex.org/W2109715166","https://openalex.org/W2112382496","https://openalex.org/W2114857957","https://openalex.org/W2118781674","https://openalex.org/W2129774092","https://openalex.org/W2129996459","https://openalex.org/W2130863229","https://openalex.org/W2134153749","https://openalex.org/W2136593687","https://openalex.org/W2140252368","https://openalex.org/W2141885858","https://openalex.org/W2146856779","https://openalex.org/W2147776446","https://openalex.org/W2148753315","https://openalex.org/W2148762636","https://openalex.org/W2151831732","https://openalex.org/W2153941254","https://openalex.org/W2159460045","https://openalex.org/W2159482845","https://openalex.org/W2165674132","https://openalex.org/W2166559705","https://openalex.org/W2167482691","https://openalex.org/W2167869241","https://openalex.org/W2170698461","https://openalex.org/W2170726034","https://openalex.org/W2171366227","https://openalex.org/W2413154077","https://openalex.org/W2492594100","https://openalex.org/W2533430062","https://openalex.org/W4210400672","https://openalex.org/W4234423196"],"related_works":["https://openalex.org/W1660242800","https://openalex.org/W2077211377","https://openalex.org/W3152686072","https://openalex.org/W1006270037","https://openalex.org/W3129238073","https://openalex.org/W2056274461","https://openalex.org/W162527578","https://openalex.org/W2517044585","https://openalex.org/W4210967786","https://openalex.org/W1998142966"],"abstract_inverted_index":{"In":[0],"summary,":[1],"we":[2],"have":[3,58],"a":[4,11,42,51],"tool":[5,39,61],"that":[6,30],"can":[7],"be":[8],"used":[9],"for":[10,45,64],"wide":[12],"variety":[13],"of":[14,53],"applications":[15],"in":[16,27],"biology,":[17],"medicine,":[18],"or":[19],"agriculture.":[20],"The":[21,38],"pattern":[22],"mining":[23],"engine":[24],"is":[25],"global":[26],"the":[28,35,54,60,65],"way":[29],"patterns":[31],"are":[32],"determined":[33],"across":[34],"entire":[36],"network.":[37,56],"still":[40],"permits":[41],"localized":[43],"analysis":[44,67],"users":[46],"who":[47],"want":[48],"to":[49],"analyze":[50],"subportion":[52],"total":[55],"We":[57],"named":[59],"BISON":[62],"(Bio-Interface":[63],"Semi-global":[66],"Of":[68],"Network":[69],"patterns).":[70]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
