{"id":"https://openalex.org/W2198888083","doi":"https://doi.org/10.1186/1748-7188-9-2","title":"Using cascading Bloom filters to improve the memory usage for de Brujin graphs","display_name":"Using cascading Bloom filters to improve the memory usage for de Brujin graphs","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2198888083","doi":"https://doi.org/10.1186/1748-7188-9-2","mag":"2198888083","pmid":"https://pubmed.ncbi.nlm.nih.gov/24565280"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-9-2","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-9-2","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-9-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109515342","display_name":"Kamil Salikhov","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Kamil Salikhov","raw_affiliation_strings":["Lomonosov Moscow State University, Moscow, Russia","MSU - Lomonosov Moscow State University (GSP-1, Leninskie Gory, Moscow, 119991, Russian Federation - Russia)"],"affiliations":[{"raw_affiliation_string":"Lomonosov Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"MSU - Lomonosov Moscow State University (GSP-1, Leninskie Gory, Moscow, 119991, Russian Federation - Russia)","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111967478","display_name":"Gustavo Sacomoto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gustavo Sacomoto","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes, Grenoble, France","Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 Lyon 1, Lyon, France","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","Baobab (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes, Grenoble, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 Lyon 1, Lyon, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012626407","display_name":"Gr\u00e9gory Kucherov","orcid":"https://orcid.org/0000-0001-5899-5424"},"institutions":[{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["FR","IL"],"is_corresponding":false,"raw_author_name":"Gregory Kucherov","raw_affiliation_strings":["Department of Computer Science, Ben-Gurion University of the Negev, Be'er Sheva, Israel. Gregory.Kucherov@univ-mlv.fr","LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 de Paris-Est Marne-la-Vall\u00e9e, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)","Department of Computer Science [Beer-Sheva] (Department of Computer Science\r\nBen Gurion University of the Negev\r\nP.O.B 653 Be'er Sheva 84105\r\n - Israel)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ben-Gurion University of the Negev, Be'er Sheva, Israel. Gregory.Kucherov@univ-mlv.fr","institution_ids":[]},{"raw_affiliation_string":"LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 de Paris-Est Marne-la-Vall\u00e9e, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]},{"raw_affiliation_string":"Department of Computer Science [Beer-Sheva] (Department of Computer Science\r\nBen Gurion University of the Negev\r\nP.O.B 653 Be'er Sheva 84105\r\n - Israel)","institution_ids":["https://openalex.org/I124227911"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5109515342"],"corresponding_institution_ids":["https://openalex.org/I19880235"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":5.1238,"has_fulltext":true,"cited_by_count":77,"citation_normalized_percentile":{"value":0.96414872,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"9","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9376999735832214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.9317554235458374},{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.9212192893028259},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.747636079788208},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.6155266761779785},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4983220100402832},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4424835741519928},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3274000883102417},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2999057471752167},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1642765998840332},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.1543254554271698},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06748014688491821}],"concepts":[{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.9317554235458374},{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.9212192893028259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.747636079788208},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.6155266761779785},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4983220100402832},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4424835741519928},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3274000883102417},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2999057471752167},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1642765998840332},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.1543254554271698},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06748014688491821},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1748-7188-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-9-2","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-9-2","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:24565280","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24565280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:HAL:hal-00971576v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00971576","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://almob.biomedcentral.com/articles/10.1186/1748-7188-9-2","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2963747","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3974045","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-9-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-9-2","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-9-2","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7717958309","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G7758152977","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2198888083.pdf","grobid_xml":"https://content.openalex.org/works/W2198888083.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W1703904868","https://openalex.org/W1972924519","https://openalex.org/W2009119978","https://openalex.org/W2010361633","https://openalex.org/W2057253402","https://openalex.org/W2063544484","https://openalex.org/W2065669787","https://openalex.org/W2103635790","https://openalex.org/W2105656684","https://openalex.org/W2113915152","https://openalex.org/W2126419817","https://openalex.org/W2133531097","https://openalex.org/W2134153749","https://openalex.org/W2136651963","https://openalex.org/W2163830511","https://openalex.org/W2750246235","https://openalex.org/W4243961364"],"related_works":["https://openalex.org/W2081869611","https://openalex.org/W2179933869","https://openalex.org/W3176416739","https://openalex.org/W744786805","https://openalex.org/W2150999591","https://openalex.org/W2011343125","https://openalex.org/W2099972273","https://openalex.org/W1564712904","https://openalex.org/W2623698249","https://openalex.org/W2113436622"],"abstract_inverted_index":{"The":[0],"proposed":[1],"data":[2],"structure":[3],"constitutes,":[4],"to":[5],"our":[6],"knowledge,":[7],"currently":[8],"the":[9],"most":[10],"efficient":[11],"practical":[12],"representation":[13],"of":[14],"de":[15],"Bruijn":[16],"graphs.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
