{"id":"https://openalex.org/W2171605109","doi":"https://doi.org/10.1186/1748-7188-8-19","title":"MORPH-PRO: a novel algorithm and web server for protein morphing","display_name":"MORPH-PRO: a novel algorithm and web server for protein morphing","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2171605109","doi":"https://doi.org/10.1186/1748-7188-8-19","mag":"2171605109","pmid":"https://pubmed.ncbi.nlm.nih.gov/23844614"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-8-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-8-19","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-8-19","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-8-19","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017500074","display_name":"Natalie Castellana","orcid":null},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":true,"raw_author_name":"Natalie E Castellana","raw_affiliation_strings":["Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia. kira@math.spbu.ru","Department of Computer Science, University of California-San Diego, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia. kira@math.spbu.ru","institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I172901346"]},{"raw_affiliation_string":"Department of Computer Science, University of California-San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081838492","display_name":"Andrey Lushnikov","orcid":null},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Andrey Lushnikov","raw_affiliation_strings":["Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia","institution_ids":["https://openalex.org/I1328943360"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000426342","display_name":"Piotr Rotkiewicz","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Piotr Rotkiewicz","raw_affiliation_strings":["Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028217951","display_name":"Natasha Sefcovic","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natasha Sefcovic","raw_affiliation_strings":["Joint Center for Structural Genomics, Bioinformatics Core, University of California-San Diego, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, Bioinformatics Core, University of California-San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I4210091204","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Pavel A Pevzner","raw_affiliation_strings":["Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia","Department of Computer Science, University of California-San Diego, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia","institution_ids":["https://openalex.org/I1328943360"]},{"raw_affiliation_string":"Department of Computer Science, University of California-San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010671148","display_name":"Adam Godzik","orcid":"https://orcid.org/0000-0002-2425-852X"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Godzik","raw_affiliation_strings":["Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077647562","display_name":"Kira Vyatkina","orcid":"https://orcid.org/0000-0001-7356-1616"},"institutions":[{"id":"https://openalex.org/I1328943360","display_name":"Saint Petersburg Academic University","ror":"https://ror.org/05ne3s142","country_code":"RU","type":"education","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1328943360","https://openalex.org/I4210096333"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Kira Vyatkina","raw_affiliation_strings":["Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Biology Laboratory, Saint Petersburg Academic University, Saint Petersburg, Russia","institution_ids":["https://openalex.org/I1328943360"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5017500074"],"corresponding_institution_ids":["https://openalex.org/I1328943360","https://openalex.org/I172901346","https://openalex.org/I36258959"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":0.0,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.1140566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"1","first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.45329999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.45329999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.1835000067949295,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.1136000007390976,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/morphing","display_name":"Morphing","score":0.8922680616378784},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7729068398475647},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7017607688903809},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5498554110527039},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5021069049835205},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49101686477661133},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.45244118571281433},{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.447835236787796},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41807520389556885},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3676847815513611},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.28536903858184814},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26833605766296387},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2513590455055237},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.22159883379936218},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17868027091026306},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.11291530728340149},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11039459705352783},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.08534011244773865}],"concepts":[{"id":"https://openalex.org/C50637493","wikidata":"https://www.wikidata.org/wiki/Q1136781","display_name":"Morphing","level":2,"score":0.8922680616378784},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7729068398475647},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7017607688903809},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5498554110527039},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5021069049835205},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49101686477661133},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.45244118571281433},{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.447835236787796},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41807520389556885},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3676847815513611},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.28536903858184814},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26833605766296387},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2513590455055237},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.22159883379936218},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17868027091026306},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.11291530728340149},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11039459705352783},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.08534011244773865},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1748-7188-8-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-8-19","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-8-19","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:23844614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23844614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt14g9r9r8","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/14g9r9r8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, vol 8, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2732026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3738870","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:qt14g9r9r8","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/14g9r9r8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Castellana, Natalie E; Lushnikov, Andrey; Rotkiewicz, Piotr; Sefcovic, Natasha; Pevzner, Pavel A; Godzik, Adam; \u00c2\u00a0et al.(2013). MORPH-PRO: a novel algorithm and web server for protein morphing. Algorithms for Molecular Biology, 8(1), 19. doi: http://dx.doi.org/10.1186/1748-7188-8-19. Retrieved from: http://www.escholarship.org/uc/item/14g9r9r8","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-8-19","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-8-19","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-8-19","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1068637249","display_name":"IGERT Plant System Biology Interdisciplinary Graduate Training Program","funder_award_id":"0504645","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171605109.pdf","grobid_xml":"https://content.openalex.org/works/W2171605109.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W1550166367","https://openalex.org/W1966743338","https://openalex.org/W1974645077","https://openalex.org/W1976422615","https://openalex.org/W1984527736","https://openalex.org/W1986165628","https://openalex.org/W1987104859","https://openalex.org/W1990137109","https://openalex.org/W1994332124","https://openalex.org/W1997486650","https://openalex.org/W2001008407","https://openalex.org/W2004967944","https://openalex.org/W2005865331","https://openalex.org/W2007218072","https://openalex.org/W2015642465","https://openalex.org/W2031340110","https://openalex.org/W2043528001","https://openalex.org/W2048287651","https://openalex.org/W2050456292","https://openalex.org/W2071152222","https://openalex.org/W2074231493","https://openalex.org/W2079153029","https://openalex.org/W2081287834","https://openalex.org/W2083262282","https://openalex.org/W2083669917","https://openalex.org/W2097642323","https://openalex.org/W2120781005","https://openalex.org/W2128567635","https://openalex.org/W2130479394","https://openalex.org/W2136567909","https://openalex.org/W2149301682","https://openalex.org/W2164548935","https://openalex.org/W2164804788"],"related_works":["https://openalex.org/W2808384273","https://openalex.org/W1679315481","https://openalex.org/W3151495635","https://openalex.org/W4236870338","https://openalex.org/W2145118195","https://openalex.org/W2107326055","https://openalex.org/W3118344282","https://openalex.org/W2117699649","https://openalex.org/W2055457867","https://openalex.org/W2146674646"],"abstract_inverted_index":{"BACKGROUND:":[0],"Proteins":[1],"are":[2,128,182],"known":[3,136],"to":[4,13,23,29,67,100,130,135,185],"be":[5,98,211],"dynamic":[6],"in":[7,27,121,155,199],"nature,":[8],"changing":[9],"from":[10,64,94],"one":[11,65],"conformation":[12,66],"another":[14,68],"while":[15],"performing":[16],"vital":[17],"cellular":[18],"tasks.":[19],"It":[20],"is":[21,167,191],"important":[22,168],"understand":[24,31],"these":[25,195],"movements":[26],"order":[28],"better":[30],"protein":[32,54,61,164,172],"function.":[33,173],"At":[34],"the":[35,47,110,148,152,175],"same":[36],"time,":[37],"experimental":[38],"techniques":[39],"provide":[40,101],"us":[41],"with":[42,132],"only":[43],"single":[44],"snapshots":[45],"of":[46,50,59,73,113,151,163,171],"whole":[48],"ensemble":[49],"available":[51],"conformations.":[52,75],"Computational":[53],"morphing":[55,82,96],"provides":[56],"a":[57,60,71,79,114,122],"visualization":[58],"structure":[62],"transitioning":[63],"by":[69,108,179],"producing":[70],"series":[72],"intermediate":[74,103,111,153,176],"RESULTS:":[76],"We":[77,89,105,188],"present":[78],"novel,":[80],"efficient":[81],"algorithm,":[83],"Morph-Pro":[84,207],"based":[85],"on":[86],"linear":[87],"interpolation.":[88],"also":[90],"show":[91],"that":[92],"apart":[93],"visualization,":[95],"can":[97,210],"used":[99],"plausible":[102],"structures.":[104,187],"test":[106],"this":[107],"using":[109,142],"structures":[112,127,140,154,177,198],"c-Jun":[115],"N-terminal":[116],"kinase":[117],"(JNK1)":[118],"conformational":[119,165],"change":[120],"virtual":[123,158,204],"docking":[124,201],"experiment.":[125],"The":[126,206],"shown":[129],"dock":[131],"higher":[133],"score":[134],"JNK1-binding":[137],"ligands":[138],"than":[139],"solved":[141],"X-Ray":[143],"crystallography.":[144],"This":[145],"experiment":[146],"demonstrates":[147],"potential":[149,193],"applications":[150],"modeling":[156],"or":[157],"screening":[159],"efforts.":[160],"CONCLUSIONS:":[161],"Visualization":[162],"changes":[166],"for":[169,194],"characterization":[170],"Furthermore,":[174],"produced":[178],"our":[180],"algorithm":[181],"good":[183],"approximations":[184],"true":[186],"believe":[189],"there":[190],"great":[192],"computationally":[196],"predicted":[197],"protein-ligand":[200],"experiments":[202],"and":[203],"screening.":[205],"web":[208],"server":[209],"accessed":[212],"at":[213],"http://morph-pro.bioinf.spbau.ru.":[214]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
