{"id":"https://openalex.org/W2124321327","doi":"https://doi.org/10.1186/1748-7188-7-21","title":"Bootstrapping phylogenies inferred from rearrangement data","display_name":"Bootstrapping phylogenies inferred from rearrangement data","publication_year":2012,"publication_date":"2012-08-29","ids":{"openalex":"https://openalex.org/W2124321327","doi":"https://doi.org/10.1186/1748-7188-7-21","mag":"2124321327","pmid":"https://pubmed.ncbi.nlm.nih.gov/22931958"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-21","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-21","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-21","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079714822","display_name":"Yu Lin","orcid":"https://orcid.org/0000-0001-6339-2644"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Yu Lin","raw_affiliation_strings":["Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland. bernard.moret@epfl.ch","Laboratory for Computational Biology and Bioinformatics, EPFL, Switzerland"],"affiliations":[{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland. bernard.moret@epfl.ch","institution_ids":[]},{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079452621","display_name":"Vaibhav Rajan","orcid":"https://orcid.org/0000-0002-6748-6864"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Vaibhav Rajan","raw_affiliation_strings":["Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland","Laboratory for Computational Biology and Bioinformatics, EPFL, Switzerland"],"affiliations":[{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059287546","display_name":"Bernard M. E. Moret","orcid":"https://orcid.org/0000-0003-1549-4544"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bernard ME Moret","raw_affiliation_strings":["Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland","Laboratory for Computational Biology and Bioinformatics, EPFL"],"affiliations":[{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5079714822"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":0.671,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.69277647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bootstrapping","display_name":"Bootstrapping (finance)","score":0.749708890914917},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7036789059638977},{"id":"https://openalex.org/keywords/jackknife-resampling","display_name":"Jackknife resampling","score":0.6885499954223633},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6244860887527466},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5680030584335327},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.542628288269043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5123084783554077},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4374850392341614},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.43632930517196655},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4230189621448517},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4140464663505554},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3772343397140503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34758490324020386},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3398522138595581},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33675631880760193},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.17740580439567566},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16978341341018677},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15331107378005981},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08949914574623108}],"concepts":[{"id":"https://openalex.org/C207609745","wikidata":"https://www.wikidata.org/wiki/Q4944086","display_name":"Bootstrapping (finance)","level":2,"score":0.749708890914917},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7036789059638977},{"id":"https://openalex.org/C81790035","wikidata":"https://www.wikidata.org/wiki/Q847158","display_name":"Jackknife resampling","level":3,"score":0.6885499954223633},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6244860887527466},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5680030584335327},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.542628288269043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5123084783554077},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4374850392341614},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.43632930517196655},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4230189621448517},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4140464663505554},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3772343397140503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34758490324020386},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3398522138595581},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33675631880760193},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.17740580439567566},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16978341341018677},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15331107378005981},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08949914574623108},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1748-7188-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-21","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-21","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:22931958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22931958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:doaj.org/article:224ebc4a075a4d60b06087420d3a506b","is_oa":true,"landing_page_url":"https://doaj.org/article/224ebc4a075a4d60b06087420d3a506b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 7, Iss 1, p 21 (2012)","raw_type":"article"},{"id":"pmh:oai:infoscience.epfl.ch:184434","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/184434","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/153326","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/153326","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3487984","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3487984","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-7-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-21","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-21","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124321327.pdf","grobid_xml":"https://content.openalex.org/works/W2124321327.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W1491688952","https://openalex.org/W1507091143","https://openalex.org/W1555623370","https://openalex.org/W1589174490","https://openalex.org/W1594983821","https://openalex.org/W1656398202","https://openalex.org/W1737192842","https://openalex.org/W1974676566","https://openalex.org/W1976927254","https://openalex.org/W1979469999","https://openalex.org/W1981492171","https://openalex.org/W1981509964","https://openalex.org/W1984347506","https://openalex.org/W1995945562","https://openalex.org/W1999269351","https://openalex.org/W2006355424","https://openalex.org/W2006820723","https://openalex.org/W2015472416","https://openalex.org/W2015800458","https://openalex.org/W2022394456","https://openalex.org/W2026452889","https://openalex.org/W2029423003","https://openalex.org/W2030966943","https://openalex.org/W2057729471","https://openalex.org/W2082638565","https://openalex.org/W2091380582","https://openalex.org/W2097412226","https://openalex.org/W2097706568","https://openalex.org/W2098448352","https://openalex.org/W2103546861","https://openalex.org/W2106151976","https://openalex.org/W2117897510","https://openalex.org/W2122112080","https://openalex.org/W2122903088","https://openalex.org/W2131459995","https://openalex.org/W2149628296","https://openalex.org/W2151949784","https://openalex.org/W2160045133","https://openalex.org/W2160852880","https://openalex.org/W2163165362","https://openalex.org/W2168777931","https://openalex.org/W2171189056","https://openalex.org/W2176286246","https://openalex.org/W2581259096","https://openalex.org/W2582743722","https://openalex.org/W2944768395","https://openalex.org/W3026721701","https://openalex.org/W3106889297","https://openalex.org/W3208311804","https://openalex.org/W4213205621","https://openalex.org/W4251958315","https://openalex.org/W4254275792"],"related_works":["https://openalex.org/W4248520104","https://openalex.org/W4205886662","https://openalex.org/W4362236462","https://openalex.org/W2373289085","https://openalex.org/W1569344764","https://openalex.org/W33388808","https://openalex.org/W2592875554","https://openalex.org/W2579432172","https://openalex.org/W2951088188","https://openalex.org/W4302799641"],"abstract_inverted_index":{"Our":[0],"method":[1,49],"is":[2],"the":[3,15,61],"first":[4],"to":[5,11,53,73,88],"provide":[6],"a":[7,26],"standard":[8],"of":[9,14,42,64],"assessment":[10,48],"match":[12],"that":[13,37],"classic":[16],"phylogenetic":[17,55],"bootstrap":[18],"for":[19,67],"aligned":[20,70],"sequences.":[21,71],"Its":[22],"support":[23],"values":[24],"follow":[25],"similar":[27,40],"scale":[28],"and":[29,44,81],"its":[30],"receiver-operating":[31],"characteristics":[32],"are":[33,84],"nearly":[34],"identical,":[35],"indicating":[36],"it":[38,51],"provides":[39],"levels":[41],"sensitivity":[43],"specificity.":[45],"Thus":[46],"our":[47],"makes":[50],"possible":[52],"conduct":[54],"analyses":[56,68],"on":[57,69],"whole":[58],"genomes":[59],"with":[60],"same":[62],"degree":[63],"confidence":[65],"as":[66,78],"Extensions":[72],"search-based":[74],"inference":[75],"methods":[76],"such":[77],"maximum":[79,82],"parsimony":[80],"likelihood":[83],"possible,":[85],"but":[86],"remain":[87],"be":[89],"thoroughly":[90],"tested.":[91]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
