{"id":"https://openalex.org/W2118343613","doi":"https://doi.org/10.1186/1748-7188-7-18","title":"Sampling solution traces for the problem of sorting permutations by signed reversals","display_name":"Sampling solution traces for the problem of sorting permutations by signed reversals","publication_year":2012,"publication_date":"2012-06-15","ids":{"openalex":"https://openalex.org/W2118343613","doi":"https://doi.org/10.1186/1748-7188-7-18","mag":"2118343613","pmid":"https://pubmed.ncbi.nlm.nih.gov/22704580"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-7-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-18","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-18","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-18","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047766466","display_name":"Christian Baudet","orcid":"https://orcid.org/0000-0002-9187-6512"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christian Baudet","raw_affiliation_strings":["Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1, CNRS, Villeurbanne, UMR5558, France. christian.baudet@univ-lyon1.fr","INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, , France","Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1, CNRS, Villeurbanne, UMR5558, France. christian.baudet@univ-lyon1.fr","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, , France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042140271","display_name":"Zanoni Dias","orcid":"https://orcid.org/0000-0003-3333-6822"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Zanoni Dias","raw_affiliation_strings":["Institute of Computing, University of Campinas, Campinas - SP, Brazil","Institute of Computing University of Campinas Campinas-SP Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas - SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"Institute of Computing University of Campinas Campinas-SP Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044540605","display_name":"Marie\u2010France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, 655 avenue de l\u2019Europe, 38334 Montbonnot Cedex, France","Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, Villeurbanne, UMR5558, France","INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, , France","Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, 655 avenue de l\u2019Europe, 38334 Montbonnot Cedex, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, Villeurbanne, UMR5558, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"INRIA Grenoble-Rh\u00f4ne-Alpes, team BAMBOO, , France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1,CNRS, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5044540605","https://openalex.org/A5047766466"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210101348","https://openalex.org/I4210135640"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.1875,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60737832,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"7","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.815191388130188},{"id":"https://openalex.org/keywords/permutation","display_name":"Permutation (music)","score":0.7068208456039429},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.6454861760139465},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6389470100402832},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.6007136702537537},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5522850155830383},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5456635355949402},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5222947597503662},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.5182159543037415},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.449106901884079},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37996578216552734},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.34869688749313354},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.10456782579421997},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.07405152916908264}],"concepts":[{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.815191388130188},{"id":"https://openalex.org/C21308566","wikidata":"https://www.wikidata.org/wiki/Q7169365","display_name":"Permutation (music)","level":2,"score":0.7068208456039429},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.6454861760139465},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6389470100402832},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.6007136702537537},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5522850155830383},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5456635355949402},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5222947597503662},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.5182159543037415},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.449106901884079},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37996578216552734},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.34869688749313354},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.10456782579421997},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.07405152916908264},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/1748-7188-7-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-18","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-18","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:22704580","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22704580","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:repositorio.unicamp.br:REPOSIP/71646","is_oa":true,"landing_page_url":"http://www.repositorio.unicamp.br/jspui/handle/REPOSIP/71646","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Web of Science","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:2543833","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3537553","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-00784400v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00784400","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, 2012, 7 (1), pp.18. ⟨10.1186/1748-7188-7-18⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:americanae.aecid.es:2840981","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=2840981","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Web of Science","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:f433e9704e4248c1b77e18ba96dc5b85","is_oa":true,"landing_page_url":"https://doaj.org/article/f433e9704e4248c1b77e18ba96dc5b85","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 7, Iss 1, p 18 (2012)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-7-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-18","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-18","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5712091218","display_name":null,"funder_award_id":"BEX 4676/08-4","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6008496376","display_name":null,"funder_award_id":"473867/2010-9","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8167852807","display_name":"Combinatorial exploration of the molecular landscape and evolution of intimate species relations","funder_award_id":"ANR-08-BLAN-0293","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118343613.pdf","grobid_xml":"https://content.openalex.org/works/W2118343613.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W95886379","https://openalex.org/W1554477894","https://openalex.org/W1603144785","https://openalex.org/W1866929426","https://openalex.org/W1980890118","https://openalex.org/W1989978323","https://openalex.org/W1990321397","https://openalex.org/W2009353698","https://openalex.org/W2012819777","https://openalex.org/W2016446411","https://openalex.org/W2035816193","https://openalex.org/W2037349934","https://openalex.org/W2039803514","https://openalex.org/W2062347965","https://openalex.org/W2068403678","https://openalex.org/W2095867210","https://openalex.org/W2108998942","https://openalex.org/W2119530108","https://openalex.org/W2120283259","https://openalex.org/W2124862004","https://openalex.org/W2127051446","https://openalex.org/W2129790765","https://openalex.org/W2130849966","https://openalex.org/W2133458864","https://openalex.org/W2137119840","https://openalex.org/W2139781203","https://openalex.org/W2149628296","https://openalex.org/W2152404552","https://openalex.org/W2157761435","https://openalex.org/W2163903931","https://openalex.org/W2164317385","https://openalex.org/W2167792089"],"related_works":["https://openalex.org/W2952598754","https://openalex.org/W2095055219","https://openalex.org/W2953259888","https://openalex.org/W2362374543","https://openalex.org/W2116295091","https://openalex.org/W4319430205","https://openalex.org/W3121711078","https://openalex.org/W927337369","https://openalex.org/W3198265738","https://openalex.org/W2348196682"],"abstract_inverted_index":{"BACKGROUND:":[0],"Traditional":[1],"algorithms":[2,154,244,291,321],"to":[3,46,86,95,145,172,236,247,254,268,298],"solve":[4],"the":[5,18,37,48,62,75,107,118,128,135,160,176,179,189,200,219,225,238,260,263,279,320,329,339],"problem":[6],"of":[7,20,33,40,64,78,80,101,106,110,120,124,137,159,163,175,178,181,191,197,202,214,222,240,262,338,341],"sorting":[8],"by":[9],"signed":[10],"reversals":[11,41,198],"output":[12],"just":[13],"one":[14],"optimal":[15,22,65,139,203],"solution":[16],"while":[17],"space":[19,136,180],"all":[21,138,182],"solutions":[23,34,66,81],"can":[24,60,113,167,282],"be":[25,44,114,131,146,168,283],"huge.":[26],"A":[27,98],"so-called":[28],"trace":[29],"represents":[30],"a":[31,52,68,104,157,194,211,232,296,335],"group":[32],"which":[35,327],"share":[36],"same":[38],"set":[39,63,77,109,162,340],"that":[42,165,217,278],"must":[43],"applied":[45],"sort":[47],"original":[49],"permutation":[50],"following":[51],"partial":[53,99],"ordering.":[54],"By":[55],"using":[56],"traces,":[57],"we":[58],"therefore":[59],"represent":[61],"in":[67,170,210,287],"more":[69],"compact":[70],"way.":[71],"Algorithms":[72],"for":[73,117,155,250,317],"enumerating":[74],"complete":[76,108,161,220,336],"traces":[79,102,111,164,192,249,265,300,307],"were":[82,245],"developed.":[83],"However,":[84],"due":[85],"their":[87,90,269],"exponential":[88],"complexity,":[89],"practical":[91],"use":[92],"is":[93,103,142,229],"limited":[94],"small":[96],"permutations.":[97,126],"enumeration":[100,221,239,337],"sampling":[105,129,158],"and":[112,151,271,293,311,323],"an":[115,215,284],"alternative":[116],"study":[119],"distinct":[121],"evolutionary":[122],"scenarios":[123],"big":[125],"Ideally,":[127],"should":[130],"done":[132],"uniformly":[133],"from":[134],"solutions.":[140,183],"This":[141],"however":[143,309],"conjectured":[144],"\u266fP-complete.":[147],"RESULTS:":[148],"We":[149,258],"propose":[150],"evaluate":[152],"three":[153],"producing":[156],"instead":[166],"shown":[169],"practice":[171],"preserve":[173],"some":[174],"characteristics":[177],"The":[184,205,290],"first":[185],"algorithm":[186,207,216,227],"(RA)":[187],"performs":[188,218],"construction":[190],"through":[193],"random":[195],"selection":[196],"on":[199,231],"list":[201],"1-sequences.":[204],"second":[206],"(DFALT)":[208],"consists":[209],"slight":[212],"modification":[213],"traces.":[223,241,342],"Finally,":[224],"third":[226],"(SWA)":[228],"based":[230],"sliding":[233],"window":[234],"strategy":[235],"improve":[237],"All":[242],"proposed":[243],"able":[246],"enumerate":[248],"permutations":[251],"with":[252,266,301,334],"up":[253],"200":[255],"elements.":[256],"CONCLUSIONS:":[257],"analysed":[259],"distribution":[261],"enumerated":[264],"respect":[267],"height":[270],"average":[272,303],"reversal":[273,280,304,330],"length.":[274,305],"Various":[275],"works":[276],"indicate":[277],"length":[281,331],"important":[285],"aspect":[286],"genome":[288],"rearrangements.":[289],"RA":[292],"SWA":[294,324],"show":[295,315],"tendency":[297],"lose":[299],"high":[302],"Such":[306],"are":[308],"rare,":[310],"qualitatively":[312],"our":[313],"results":[314],"that,":[316],"testable-sized":[318],"permutations,":[319],"DFALT":[322],"produce":[325],"distributions":[326,332],"approximate":[328],"observed":[333]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}