{"id":"https://openalex.org/W2111588838","doi":"https://doi.org/10.1186/1748-7188-7-10","title":"Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis","display_name":"Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis","publication_year":2012,"publication_date":"2012-05-02","ids":{"openalex":"https://openalex.org/W2111588838","doi":"https://doi.org/10.1186/1748-7188-7-10","mag":"2111588838","pmid":"https://pubmed.ncbi.nlm.nih.gov/22551152"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-7-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-10","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-10","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005271169","display_name":"Susana Vinga","orcid":"https://orcid.org/0000-0002-1954-5487"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Susana Vinga","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R, Alves Redol 9, 1000-029 Lisboa, Portugal. svinga@kdbio.inesc-id.pt","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R, Alves Redol 9, 1000-029 Lisboa, Portugal. svinga@kdbio.inesc-id.pt","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010513234","display_name":"Alexandra M. Carvalho","orcid":"https://orcid.org/0000-0001-6607-7711"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4210120471","display_name":"Instituto de Telecomunica\u00e7\u00f5es","ror":"https://ror.org/02ht4fk33","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210120471"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandra M Carvalho","raw_affiliation_strings":["Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","Instituto de Telecomunica\u00e7\u00f5es (IT), Av. Rovisco Pais 1, Torre Norte, Piso 10, Lisboa, 1049-001, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Telecomunica\u00e7\u00f5es (IT), Av. Rovisco Pais 1, Torre Norte, Piso 10, Lisboa, 1049-001, Portugal","institution_ids":["https://openalex.org/I4210120471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110540557","display_name":"Alexandre P. Francisco","orcid":"https://orcid.org/0000-0003-4852-1641"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre P Francisco","raw_affiliation_strings":["Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027395190","display_name":"Lu\u00eds M. S.\u200bRusso","orcid":"https://orcid.org/0000-0002-1966-1808"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Lu\u00eds MS Russo","raw_affiliation_strings":["Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico, Universidade T\u00e9cnica de Lisboa (IST/UTL), Av. Rovisco Pais 1, Lisboa, 1049-001, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores: Investiga\u00e7\u00e3o e Desenvolvimento (INESC-ID), R. Alves Redol 9, Lisboa, 1000-029, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012322429","display_name":"Jonas S. Almeida","orcid":"https://orcid.org/0000-0002-7883-7922"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonas S Almeida","raw_affiliation_strings":["Div Informatics, Dept Pathology, University of Alabama at Birmingham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Div Informatics, Dept Pathology, University of Alabama at Birmingham, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005271169"],"corresponding_institution_ids":["https://openalex.org/I121345201"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":1.105,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.76256239,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.40639999508857727,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.40639999508857727,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.37929999828338623,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.06109999865293503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.7219254970550537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.622262716293335},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.596947193145752},{"id":"https://openalex.org/keywords/iterated-function","display_name":"Iterated function","score":0.47176507115364075},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.45551174879074097},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.44669198989868164},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.41741642355918884},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.413248211145401},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3951870799064636},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.33104562759399414},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.3152550756931305},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28003668785095215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18382969498634338}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.7219254970550537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.622262716293335},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.596947193145752},{"id":"https://openalex.org/C140479938","wikidata":"https://www.wikidata.org/wiki/Q5254619","display_name":"Iterated function","level":2,"score":0.47176507115364075},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.45551174879074097},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.44669198989868164},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.41741642355918884},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.413248211145401},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3951870799064636},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.33104562759399414},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3152550756931305},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28003668785095215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18382969498634338},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1748-7188-7-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-10","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-10","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:22551152","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22551152","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:doaj.org/article:6adf1dbab6514012be59c259a49ab068","is_oa":true,"landing_page_url":"https://doaj.org/article/6adf1dbab6514012be59c259a49ab068","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 7, Iss 1, p 10 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3402988","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3402988","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"},{"id":"pmh:oai:run.unl.pt:10362/23351","is_oa":true,"landing_page_url":"http://hdl.handle.net/10362/23351","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-7-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-7-10","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-7-10","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111588838.pdf","grobid_xml":"https://content.openalex.org/works/W2111588838.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1544540238","https://openalex.org/W1674453943","https://openalex.org/W1810898805","https://openalex.org/W1888860385","https://openalex.org/W1972418517","https://openalex.org/W1974152305","https://openalex.org/W1981343642","https://openalex.org/W1985108724","https://openalex.org/W1987923714","https://openalex.org/W1990061958","https://openalex.org/W2000630039","https://openalex.org/W2009570821","https://openalex.org/W2009942324","https://openalex.org/W2011485152","https://openalex.org/W2012359195","https://openalex.org/W2016648661","https://openalex.org/W2034728773","https://openalex.org/W2043257091","https://openalex.org/W2043545545","https://openalex.org/W2050576295","https://openalex.org/W2054898096","https://openalex.org/W2059513841","https://openalex.org/W2061680337","https://openalex.org/W2068308871","https://openalex.org/W2073403831","https://openalex.org/W2078889228","https://openalex.org/W2079841192","https://openalex.org/W2088386938","https://openalex.org/W2097341408","https://openalex.org/W2098475202","https://openalex.org/W2099964107","https://openalex.org/W2101421856","https://openalex.org/W2101601013","https://openalex.org/W2101850191","https://openalex.org/W2102204963","https://openalex.org/W2103441770","https://openalex.org/W2115219588","https://openalex.org/W2124985265","https://openalex.org/W2129103781","https://openalex.org/W2130200371","https://openalex.org/W2134325994","https://openalex.org/W2140211206","https://openalex.org/W2148757270","https://openalex.org/W2150039113","https://openalex.org/W2153203288","https://openalex.org/W2158815738","https://openalex.org/W2171963266","https://openalex.org/W2912837579","https://openalex.org/W3145128584","https://openalex.org/W4211001886","https://openalex.org/W4245668478","https://openalex.org/W4246219036","https://openalex.org/W4299685333"],"related_works":["https://openalex.org/W3022344494","https://openalex.org/W2070949798","https://openalex.org/W2902482624","https://openalex.org/W2902555313","https://openalex.org/W2376315482","https://openalex.org/W4249054680","https://openalex.org/W3112977702","https://openalex.org/W2218650848","https://openalex.org/W2366227422","https://openalex.org/W2963001712"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chaos":[1],"Game":[2],"Representation":[3],"(CGR)":[4],"is":[5,166,232],"an":[6,42],"iterated":[7],"function":[8,203],"that":[9,91,100,126,167,194],"bijectively":[10],"maps":[11],"discrete":[12,21],"sequences":[13,22,72,213],"into":[14],"a":[15,19,79,185,200,261,266],"continuous":[16],"domain.":[17],"As":[18],"result,":[20],"can":[23,93,128,196],"be":[24,46,94,197],"object":[25],"of":[26,39,51,82,113,132,163,177,211,227,268],"statistical":[27],"and":[28,73,118,135,143,153,156,224,238],"topological":[29],"analyses":[30],"otherwise":[31],"reserved":[32],"to":[33,78,97,183,234,239],"numerical":[34],"systems.":[35],"Characteristically,":[36],"CGR":[37,62,127,195,231,258],"coordinates":[38],"substrings":[40],"sharing":[41],"L-long":[43],"suffix":[44,133],"will":[45],"located":[47],"within":[48,204],"2-L":[49],"distance":[50],"each":[52],"other.":[53],"In":[54],"the":[55,89,130,205,236,241],"two":[56],"decades":[57],"since":[58],"its":[59,67],"original":[60,68],"proposal,":[61],"has":[63,74],"been":[64,75],"generalized":[65],"beyond":[66],"focus":[69],"on":[70,102,215],"genomic":[71],"successfully":[76],"applied":[77],"wide":[80],"range":[81],"problems":[83,117,147,165],"in":[84],"bioinformatics.":[85],"This":[86],"report":[87],"explores":[88],"possibility":[90],"it":[92],"further":[95],"extended":[96],"approach":[98],"algorithms":[99],"rely":[101],"discrete,":[103],"graph-based":[104,243],"representations.":[105],"RESULTS:":[106],"The":[107,160,209],"exploratory":[108],"analysis":[109,210,248],"described":[110],"here":[111],"consisted":[112],"selecting":[114],"foundational":[115],"string":[116,138,145],"refactoring":[119],"them":[120],"using":[121],"CGR-based":[122],"algorithms.":[123],"We":[124],"found":[125,233],"take":[129],"role":[131],"trees":[134],"emulate":[136],"sophisticated":[137],"algorithms,":[139],"efficiently":[140],"solving":[141],"exact":[142],"approximate":[144],"matching":[146,157,270],"such":[148],"as":[149,175,199],"finding":[150],"all":[151],"palindromes":[152],"tandem":[154],"repeats,":[155],"with":[158,189],"mismatches.":[159],"common":[161,171],"feature":[162],"these":[164],"they":[168],"use":[169],"longest":[170],"extension":[172],"(LCE)":[173],"queries":[174],"subtasks":[176],"their":[178],"procedures,":[179],"which":[180],"we":[181,192],"show":[182,193],"have":[184],"constant":[186],"time":[187],"solution":[188],"CGR.":[190],"Additionally,":[191],"used":[198],"rolling":[201],"hash":[202],"Rabin-Karp":[206],"algorithm.":[207],"CONCLUSIONS:":[208],"biological":[212],"relies":[214],"algorithmic":[216],"foundations":[217],"facing":[218],"mounting":[219],"challenges,":[220],"both":[221],"logistic":[222],"(performance)":[223],"analytical":[225,263],"(lack":[226],"unifying":[228,262],"mathematical":[229],"framework).":[230],"provide":[235],"latter":[237],"promise":[240],"former:":[242],"data":[244,254],"structures":[245,255],"for":[246,265],"sequence":[247],"operations":[249],"are":[250],"entailed":[251],"by":[252,257],"numerical-based":[253],"produced":[256],"maps,":[259],"providing":[260],"framework":[264],"diversity":[267],"pattern":[269],"problems.":[271]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":7}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
