{"id":"https://openalex.org/W2093253451","doi":"https://doi.org/10.1186/1748-7188-6-9","title":"Estimation of alternative splicing isoform frequencies from RNA-Seq data","display_name":"Estimation of alternative splicing isoform frequencies from RNA-Seq data","publication_year":2011,"publication_date":"2011-04-19","ids":{"openalex":"https://openalex.org/W2093253451","doi":"https://doi.org/10.1186/1748-7188-6-9","mag":"2093253451","pmid":"https://pubmed.ncbi.nlm.nih.gov/21504602"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-6-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-9","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-9","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036625529","display_name":"Marius Nicolae","orcid":"https://orcid.org/0000-0002-5667-3189"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marius Nicolae","raw_affiliation_strings":["Department of Computer Science & Engineering, University of Connecticut,371 Fairfield Rd,, Unit 2155, Storrs, CT 06269-2155, USA. man09004@engr.uconn.edu","Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, University of Connecticut,371 Fairfield Rd,, Unit 2155, Storrs, CT 06269-2155, USA. man09004@engr.uconn.edu","institution_ids":[]},{"raw_affiliation_string":"Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Serghei Mangul","raw_affiliation_strings":["Computer Science Department, Georgia State University, University Plaza, Atlanta, Georgia, 30303, USA","Computer Science Department, Georgia State University, University Plaza, Atlanta, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, Georgia, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014788373","display_name":"Ion M\u0103ndoiu","orcid":"https://orcid.org/0000-0002-4818-0237"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ion I M\u0103ndoiu","raw_affiliation_strings":["Department of Computer Science & Engineering, University of Connecticut, 371 Fairfield Rd., Unit 2155, Storrs, CT, 06269-2155, USA","Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, University of Connecticut, 371 Fairfield Rd., Unit 2155, Storrs, CT, 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Dept of Computer Science and Engineering, University of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Zelikovsky","raw_affiliation_strings":["Computer Science Department, Georgia State University, University Plaza, Atlanta, Georgia, 30303, USA","Computer Science Department, Georgia State University, University Plaza, Atlanta, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, Georgia, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Computer Science Department, Georgia State University, University Plaza, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036625529"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":7.984,"has_fulltext":true,"cited_by_count":195,"citation_normalized_percentile":{"value":0.97870233,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"6","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.7457022666931152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6890402436256409},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5613077878952026},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5612610578536987},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4716348350048065},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.4412549138069153},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4401853680610657},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.43538594245910645},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.42704877257347107},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4267312288284302},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.420957088470459},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4181777834892273},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3806697130203247},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3748362958431244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3659747838973999},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.34584689140319824},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2226521074771881},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18333959579467773},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1605679988861084}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.7457022666931152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6890402436256409},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5613077878952026},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5612610578536987},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4716348350048065},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.4412549138069153},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4401853680610657},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.43538594245910645},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.42704877257347107},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4267312288284302},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.420957088470459},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4181777834892273},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3806697130203247},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3748362958431244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3659747838973999},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.34584689140319824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2226521074771881},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18333959579467773},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1605679988861084},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/1748-7188-6-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-9","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-9","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:21504602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21504602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:scholarworks.gsu.edu:computer_science_facpub-1019","is_oa":true,"landing_page_url":"https://scholarworks.gsu.edu/computer_science_facpub/20","pdf_url":null,"source":{"id":"https://openalex.org/S4377196399","display_name":"ScholarWorks - Georgia State University (Georgia State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I181565077","host_organization_name":"Georgia State University","host_organization_lineage":["https://openalex.org/I181565077"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:818c6583ddc94e969b5c314d44cf815f","is_oa":true,"landing_page_url":"https://doaj.org/article/818c6583ddc94e969b5c314d44cf815f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 6, Iss 1, p 9 (2011)","raw_type":"article"},{"id":"pmh:oai:drops-oai.dagstuhl.de:2687","is_oa":true,"landing_page_url":"https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.5","pdf_url":null,"source":{"id":"https://openalex.org/S4377196569","display_name":"DROPS (Schloss Dagstuhl \u2013 Leibniz Center for Informatics)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2799853480","host_organization_name":"Schloss Dagstuhl \u2013 Leibniz Center for Informatics","host_organization_lineage":["https://openalex.org/I2799853480"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"InProceedings"},{"id":"pmh:oai:pubmedcentral.nih.gov:3107792","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3107792","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"},{"id":"pmh:oai:scholarworks.gsu.edu:20.500.14694/3640","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.14694/3640","pdf_url":null,"source":{"id":"https://openalex.org/S4377196399","display_name":"ScholarWorks - Georgia State University (Georgia State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I181565077","host_organization_name":"Georgia State University","host_organization_lineage":["https://openalex.org/I181565077"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"doi:10.4230/dagsemproc.10231.5","is_oa":true,"landing_page_url":"https://doi.org/10.4230/dagsemproc.10231.5","pdf_url":null,"source":{"id":"https://openalex.org/S7407052059","display_name":"Dagstuhl Research Online Publication Server","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-6-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-9","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-9","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2096208076","display_name":"III: Small:  Collaborative Research:  Reconstruction of Haplotype Spectra from High-Throughput Sequencing Data","funder_award_id":"0916948","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2624405081","display_name":"CAREER: Combinatorial Algorithms for High-Throughput Collection and Analysis of Genomic Diversity Data","funder_award_id":"0546457","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2913475401","display_name":null,"funder_award_id":"091640","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3754485978","display_name":"III: Small:  Collaborative Research:  Reconstruction of Haplotype Spectra from High-Throughput Sequencing Data","funder_award_id":"0916401","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6136016438","display_name":null,"funder_award_id":"IIS-0916401","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7144931082","display_name":null,"funder_award_id":"IIS-0916401","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8524297662","display_name":null,"funder_award_id":"2011-67016-30331","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G8643431141","display_name":"Bioinformatics Tools Enabling Large-Scale DNA Barcoding","funder_award_id":"0543365","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2093253451.pdf","grobid_xml":"https://content.openalex.org/works/W2093253451.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W144334492","https://openalex.org/W1973838650","https://openalex.org/W1981509058","https://openalex.org/W2000875411","https://openalex.org/W2011753019","https://openalex.org/W2024819063","https://openalex.org/W2030914835","https://openalex.org/W2086323500","https://openalex.org/W2097065948","https://openalex.org/W2097117811","https://openalex.org/W2099468911","https://openalex.org/W2100448568","https://openalex.org/W2107564978","https://openalex.org/W2108058966","https://openalex.org/W2112491476","https://openalex.org/W2113386140","https://openalex.org/W2114504176","https://openalex.org/W2124985265","https://openalex.org/W2132341951","https://openalex.org/W2133090587","https://openalex.org/W2138773756","https://openalex.org/W2140544891","https://openalex.org/W2141458291","https://openalex.org/W2154431984","https://openalex.org/W2154537630","https://openalex.org/W2155011418","https://openalex.org/W2155804510","https://openalex.org/W2157770058","https://openalex.org/W2160164696","https://openalex.org/W2168165642","https://openalex.org/W2169095038","https://openalex.org/W2187417714"],"related_works":["https://openalex.org/W2321791250","https://openalex.org/W2081598294","https://openalex.org/W2797310082","https://openalex.org/W2904939684","https://openalex.org/W4213427798","https://openalex.org/W2012312817","https://openalex.org/W2090969926","https://openalex.org/W2023199111","https://openalex.org/W4385462331","https://openalex.org/W2564462691"],"abstract_inverted_index":{"Empirical":[0],"experiments":[1,28],"on":[2],"both":[3],"synthetic":[4],"and":[5,16,22,58],"real":[6],"RNA-Seq":[7],"datasets":[8],"show":[9],"that":[10],"IsoEM":[11],"has":[12],"scalable":[13],"running":[14],"time":[15],"outperforms":[17],"existing":[18],"methods":[19],"of":[20,55],"isoform":[21],"gene":[23],"expression":[24,53],"level":[25],"estimation.":[26],"Simulation":[27],"confirm":[29],"previous":[30],"findings":[31],"that,":[32],"for":[33,51],"a":[34],"fixed":[35],"sequencing":[36],"cost,":[37],"using":[38],"reads":[39],"longer":[40],"than":[41],"25-36":[42],"bases":[43],"does":[44],"not":[45],"necessarily":[46],"lead":[47],"to":[48],"better":[49],"accuracy":[50],"estimating":[52],"levels":[54],"annotated":[56],"isoforms":[57],"genes.":[59]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":19},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":26},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":22}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}