{"id":"https://openalex.org/W2158241520","doi":"https://doi.org/10.1186/1748-7188-6-17","title":"A new, fast algorithm for detecting protein coevolution using maximum compatible cliques","display_name":"A new, fast algorithm for detecting protein coevolution using maximum compatible cliques","publication_year":2011,"publication_date":"2011-06-14","ids":{"openalex":"https://openalex.org/W2158241520","doi":"https://doi.org/10.1186/1748-7188-6-17","mag":"2158241520","pmid":"https://pubmed.ncbi.nlm.nih.gov/21672226"},"language":"en","primary_location":{"id":"doi:10.1186/1748-7188-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-17","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-17","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-17","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018693915","display_name":"Alex Rodionov","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Alex Rodionov","raw_affiliation_strings":["The Edward S, Rogers Sr, Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada. arod@eecg.toronto.edu","The Edward S. Rogers Sr. Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"The Edward S, Rogers Sr, Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada. arod@eecg.toronto.edu","institution_ids":[]},{"raw_affiliation_string":"The Edward S. Rogers Sr. Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046994281","display_name":"Alexandr Bezginov","orcid":"https://orcid.org/0000-0002-6270-6872"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alexandr Bezginov","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090184149","display_name":"Jonathan Rose","orcid":"https://orcid.org/0000-0002-3551-2175"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jonathan Rose","raw_affiliation_strings":["The Edward S. Rogers Sr. Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"The Edward S. Rogers Sr. Department of Electrical and Computer Engineering, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077733075","display_name":"Elisabeth R.M. Tillier","orcid":"https://orcid.org/0000-0003-2194-9058"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Elisabeth RM Tillier","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Canada","Ontario Cancer Institute, University Health Network, 101 College Street, Toronto, M5G 1L7, Canada","Ontario Cancer Institute, University Health Network, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Cancer Institute, University Health Network, 101 College Street, Toronto, M5G 1L7, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I112260969"]},{"raw_affiliation_string":"Ontario Cancer Institute, University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I1325899441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018693915","https://openalex.org/A5077733075"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I1325899441","https://openalex.org/I185261750"],"apc_list":{"value":1490,"currency":"GBP","value_usd":1827},"apc_paid":{"value":1490,"currency":"GBP","value_usd":1827},"fwci":1.5965,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.83122601,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"17","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coevolution","display_name":"Coevolution","score":0.765730619430542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7511167526245117},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4905635714530945},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35195812582969666},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15090912580490112},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.11551961302757263}],"concepts":[{"id":"https://openalex.org/C33009525","wikidata":"https://www.wikidata.org/wiki/Q208841","display_name":"Coevolution","level":2,"score":0.765730619430542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7511167526245117},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4905635714530945},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35195812582969666},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15090912580490112},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.11551961302757263}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1748-7188-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-17","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-17","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},{"id":"pmid:21672226","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21672226","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for molecular biology : AMB","raw_type":null},{"id":"pmh:oai:utoronto.scholaris.ca:1807/83822","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/83822","pdf_url":"https://utoronto.scholaris.ca/bitstreams/f55a616a-2100-4ae7-873c-f2e4d37bb285/download","source":{"id":"https://openalex.org/S7407055458","display_name":"TSpace","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:1665e961c80b41d4b889a7cb535b09b8","is_oa":true,"landing_page_url":"https://doaj.org/article/1665e961c80b41d4b889a7cb535b09b8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms for Molecular Biology, Vol 6, Iss 1, p 17 (2011)","raw_type":"article"},{"id":"pmh:oai:localhost:1807/83822","is_oa":false,"landing_page_url":"http://doi.org/10.1186/1748-7188-6-17","pdf_url":null,"source":{"id":"https://openalex.org/S4306400261","display_name":"TSpace (University of Toronto)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I185261750","host_organization_name":"University of Toronto","host_organization_lineage":["https://openalex.org/I185261750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3130660","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3130660","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1748-7188-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1748-7188-6-17","pdf_url":"https://almob.biomedcentral.com/counter/pdf/10.1186/1748-7188-6-17","source":{"id":"https://openalex.org/S205663195","display_name":"Algorithms for Molecular Biology","issn_l":"1748-7188","issn":["1748-7188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms for Molecular Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158241520.pdf","grobid_xml":"https://content.openalex.org/works/W2158241520.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1583876435","https://openalex.org/W1652298321","https://openalex.org/W1799812931","https://openalex.org/W1867732144","https://openalex.org/W1975442866","https://openalex.org/W2004805762","https://openalex.org/W2046112356","https://openalex.org/W2048448217","https://openalex.org/W2060425093","https://openalex.org/W2066356146","https://openalex.org/W2097928187","https://openalex.org/W2117513900","https://openalex.org/W2119362018","https://openalex.org/W2132022258","https://openalex.org/W2141643929","https://openalex.org/W2144074455","https://openalex.org/W2147693153","https://openalex.org/W2152568394","https://openalex.org/W2156125289","https://openalex.org/W2401610261","https://openalex.org/W2407408969","https://openalex.org/W2408621512","https://openalex.org/W2724569100","https://openalex.org/W3199943451","https://openalex.org/W4233815609","https://openalex.org/W4239632189"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3144412313","https://openalex.org/W2634235285","https://openalex.org/W2492504662","https://openalex.org/W2122994901","https://openalex.org/W2942642331","https://openalex.org/W200599908","https://openalex.org/W2020991882","https://openalex.org/W2164185151","https://openalex.org/W4389610483"],"abstract_inverted_index":{"An":[0],"implementation":[1],"of":[2],"the":[3],"MMMvII":[4],"algorithm":[5],"is":[6],"available":[7],"at:":[8],"http://www.uhnresearch.ca/labs/tillier/MMMWEBvII/MMMWEBvII.php.":[9]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}